RetrogeneDB ID:

retro_ggor_1772

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2b:44743231..44743858(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000027932
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CDK7
Ensembl ID:ENSGGOG00000013349
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1772
GTTGGAGGCTTTAAGTTTGCCGCGGTTTACAAGGCCAGAGATAAGAATACCAACCAAATTGTCGCCATTAAGAAAATCAA
ACTTGGACATAGATCAGAAGCTAAAGATGGTATAAACAGAACAGCCTTAAGAGAGATACAATTATTACAAGAGCTAAGTC
ATCCAAATATAATTGGTCTCCTTGATGCTTTTGGATGTAAGTCTAATATTAGCCTTGTCTTTGGTTTTATGGAAACTGAT
CTAGAGGTTATAATAAAGGGTAATAGTCTTGTGCTGACACCATCACACATCAATGCCTGCATGTTGATGACTCTTCAAGG
ATTAGAATATTTACATCAACATTGGATTCTACATAGGGATCTGAAACCAAGCAACTTGTTGCTAGATGAAAATGGAGTTC
TAAAACTGGCAGATTTTGGCCTGGCCAAATCATTTGGGAGCTCCAGTAGAGCTTACACATATCAGGTTGCAACCAGGTGG
TATCAGGCCCCTGAGTTACTATTTGGAGCTAGGATGTATGGTGTAGGTGTGAACATGTGGGCTGTCGGCTGTGTATTAGC
AGAGTTACTTCTAAGGTTTCCTTTTTTGTCAGGAGATTCAGAGCTTGATCAGCTAACAAGAATATTT

ORF - retro_ggor_1772 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.47 %
Parental protein coverage: 59.21 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI
.G...FA.VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI.LLQELSHPNIIGLLDAFG.KSNI
RetrocopyVGGFKFAAVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIQLLQELSHPNIIGLLDAFGCKSNI
ParentalSLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFG
SLVF.FMETDLEVIIK.NSLVLTPSHI.A.MLMTLQGLEYLHQHWILHRDLKP.NLLLDENGVLKLADFG
RetrocopySLVFGFMETDLEVIIKGNSLVLTPSHINACMLMTLQGLEYLHQHWILHRDLKPSNLLLDENGVLKLADFG
ParentalLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIF
LAKSFGS..RAYT.QV.TRWY.APELLFGARMYGVGV.MWAVGC.LAELLLR.PFL.GDS.LDQLTRIF
RetrocopyLAKSFGSSSRAYTYQVATRWYQAPELLFGARMYGVGVNMWAVGCVLAELLLRFPFLSGDSELDQLTRIF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 6 .43 RPM
SRP007412_cerebellum 0 .00 RPM 6 .58 RPM
SRP007412_heart 0 .00 RPM 1 .56 RPM
SRP007412_kidney 0 .00 RPM 8 .59 RPM
SRP007412_liver 0 .00 RPM 4 .99 RPM
SRP007412_testis 0 .00 RPM 39 .78 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1772 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1772 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2335
Pan troglodytes retro_ptro_1707
Pongo abelii retro_pabe_2114

Parental genes homology:
Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001340581 retrocopy
Gorilla gorilla ENSGGOG00000013349 1 retrocopy
retro_ggor_1772 ,
Mus musculus ENSMUSG000000690891 retrocopy
Otolemur garnettii ENSOGAG000000107481 retrocopy
Procavia capensis ENSPCAG000000025661 retrocopy
Pongo abelii ENSPPYG000000155251 retrocopy
Pan troglodytes ENSPTRG000000169461 retrocopy
Tupaia belangeri ENSTBEG000000121932 retrocopies



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