RetrogeneDB ID: | retro_pcap_318 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_34897:6404..6922(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK7 | ||
Ensembl ID: | ENSPCAG00000002566 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 7 [Source:HGNC Symbol;Acc:1778] |
Percent Identity: | 73.03 % |
Parental protein coverage: | 51.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR-VPFLPGDSDLDQLTRIFETLGTPTEEQWP |
T.QVVTRW...PEL..GAR.Y.V.VDMWA.GCIL.ELLL...PFLPGD.DLDQLTRI.ETL.TPTE..W. | |
Retrocopy | TYQVVTRWIQDPELPSGARIYRVAVDMWASGCILTELLLK<IPFLPGDLDLDQLTRISETLVTPTEDPWL |
Parental | DMCSLPDYVTFKSFPGIPLQHIFIAAGDDLLDLIQGLFLFNPCTRITATQALKTKYFSNRPAPTPGCQLP |
..CSLPDY.TFKSFPGIPLQHIF..AG.DLL.L..GLFLFNPCT..T....LKTKYF.NRPA.TPGCQ.P | |
Retrocopy | GLCSLPDYATFKSFPGIPLQHIFTVAGEDLLHLV*GLFLFNPCTCMT----LKTKYFRNRPALTPGCQWP |
Parental | RPNCPVETLKEQSNPAVATKRKRTEALEQGGLPKKLIF |
RPNCPVETLKE....AVATK..R..ALEQGGL..KLIF | |
Retrocopy | RPNCPVETLKE*PDSAVATKQRRAKALEQGGLSMKLIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000134058 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013349 | 1 retrocopy | |
Mus musculus | ENSMUSG00000069089 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010748 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002566 | 1 retrocopy |
retro_pcap_318 ,
|
Pongo abelii | ENSPPYG00000015525 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016946 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012193 | 2 retrocopies |