RetrogeneDB ID: retro_mputfur_115

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896942.1:9257622..9258369(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018778
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000005725
• Aliases: None
• Description: None

Sequence

>retro_mputfur_115
ATGGCCTGGTCAATGGGGAAACCAGCCTGCTGGAGCAGGGGCTACCCAGGGACCTCCTATCCTGGTGCCTACCCTGGACA
GGCCCCTCCTGGCAGTTATCCTGGACAGGCCCCTCCTGGTGGCTATCCTGGACAGGCCCCTCCTGGCGGCTATCCTGGAC
AGGCACCTCCAGGAGCCTACCCTGGCCCAACAGCTCCTGCTTATCCTGGACCACCTGCACCAGGAGCCTACCCTGGGCAA
CCGAGTGGGCCTGGGGCCTACCCACCTCCTGGACAGCCAAGTGCTCCTGGAGCCCAGCCCGCTGCTGGCGCCTTTGGCAT
CCCTGCTGGATCACTGACTGTACCTTATGACCTGCCCTTGCCTGGAGGAGTCATGCCTCCCATGCTGATAACAATTCTGG
GCACAATGAAGCCCAATGCAAACAGATTTGCTTTAGATTTCAAGAGAGGGAATGATGTTGCTTTCCACTTTAACCCACGC
TTCAATGAGGACAACAAGAGAGTCATTGTTTGCAATACAAAGCTGGATAACCTCTGGGGAAAGGAAGAAAGACAGGCGAC
TTTCCCATTCGAAACTGGTAAACCATTCAAAATACAAGTGCTGGTTGAATCTGACCACTTCAAGGTTGCGGTCAATGATG
CTCATTTGTTGCAGTACAATCATCCGATGAAAAATCTCCAGGAAATCAGCAAACTGGGAATTTCTGGTGACATAGATCTC
ACCAGTGCTTCACATGTTATGATATAA

Alignment

ORF - retro_mputfur_115 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.73 %
• Parental protein coverage: 81.53 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YPGQAPPGGYPGQAPPGGYPGQAPPGAYPGQAPPGGYPGQAPPGAYPGPTAPAYPGPPAPGAYPGQPSGP
          YPG...PG.YPGQAPPG.YPGQAPPG.YPGQAPPGGYPGQAPPGAYPGPTAPAYPGPPAPGAYPGQPSGP
Retrocopy YPGTSYPGAYPGQAPPGSYPGQAPPGGYPGQAPPGGYPGQAPPGAYPGPTAPAYPGPPAPGAYPGQPSGP

Parental  GAYPPPGQPSAPGAQPAAGAFGIPAGPLTVPYDLPLPGGVMPRMLITILGTTKPNANRFALDFKRGNDVA
          GAYPPPGQPSAPGAQPAAGAFGIPAG.LTVPYDLPLPGGVMP.MLITILGT.KPNANRFALDFKRGNDVA
Retrocopy GAYPPPGQPSAPGAQPAAGAFGIPAGSLTVPYDLPLPGGVMPPMLITILGTMKPNANRFALDFKRGNDVA

Parental  FHFNPRFNEDNKRVIVCNTKLDNLWGKEERQATFPFETGKPFKIQVLVESDHFKVAVNDAHLLQYNHRMK
          FHFNPRFNEDNKRVIVCNTKLDNLWGKEERQATFPFETGKPFKIQVLVESDHFKVAVNDAHLLQYNH.MK
Retrocopy FHFNPRFNEDNKRVIVCNTKLDNLWGKEERQATFPFETGKPFKIQVLVESDHFKVAVNDAHLLQYNHPMK

Parental  NLQEISKLGISGDIDLTSASHVMI
          NLQEISKLGISGDIDLTSASHVMI
Retrocopy NLQEISKLGISGDIDLTSASHVMI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_115 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_115 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000015013	1 retrocopy	retro_cfam_2018,
Mustela putorius furo	ENSMPUG00000005725	2 retrocopies	retro_mputfur_115 , retro_mputfur_535,
Pteropus vampyrus	ENSPVAG00000016067	1 retrocopy	retro_pvam_103,
Tarsius syrichta	ENSTSYG00000009020	4 retrocopies	retro_tsyr_1233, retro_tsyr_1390, retro_tsyr_1784, retro_tsyr_625,