RetrogeneDB ID: | retro_tsyr_1390 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_423078:138..858(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LGALS3 | ||
Ensembl ID: | ENSTSYG00000009020 | ||
Aliases: | None | ||
Description: | lectin, galactoside-binding, soluble, 3 [Source:HGNC Symbol;Acc:6563] |
Percent Identity: | 75.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LNDALSGSGNPNPQGWPGQWGNQPAGAGGYPGAHPYPGAYPG-QAPPGAYPGQAPPAAYPGAPGT-YPGP |
LNDAL.GSGNP.PQGWPGQWGNQPAGAGGYPGAHP.PG..PG.QAP.G.YPG...P.A.P...G..YPGP | |
Retrocopy | LNDALTGSGNPIPQGWPGQWGNQPAGAGGYPGAHPHPGVQPG>QAPLGLYPG---PIAWPNNSGS>YPGP |
Parental | PAPGAYPGQPGGPGAYPPPAQPSAPGAYPAAGPFGV-PAGPLTVPYELPLPAGVMPRMLITILGTVKPNA |
P.P..Y...PG.PGAYP.P.Q.SAP.AYPAAGPFG..PAGPLT..Y.LPL....MPRMLITIL.TVK.N. | |
Retrocopy | PTPRVY---PG*PGAYPLPTQTSAPRAYPAAGPFGF<PAGPLTMSYDLPLSGEIMPRMLITILVTVKSNT |
Parental | NRIALDFKKGNDVAFHFNPRFKEDNQRVIVCNTKVHDAWGREERHAQFPFKSGQPFKIQILVESDHFKVA |
NRI.LDFKKGNDVAFHFNP.FKED.QRVI.CNTKVHDAWG.EERHAQFP...G.PFK.Q..VESDHFKVA | |
Retrocopy | NRIVLDFKKGNDVAFHFNPHFKEDSQRVIICNTKVHDAWGKEERHAQFPLERGKPFKLQVPVESDHFKVA |
Parental | VND-AHLLQYNHRM-KNLNEITKLGISGDIDLTSASHAMI |
VND.AHLLQYNH.M.KNLNEI.KLGI..DIDLTSASH..I | |
Retrocopy | VND>AHLLQYNHLM>KNLNEISKLGIAVDIDLTSASHTVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015013 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005725 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016067 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009020 | 4 retrocopies |