RetrogeneDB ID: | retro_tsyr_1233 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_35816:8132..8606(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LGALS3 | ||
Ensembl ID: | ENSTSYG00000009020 | ||
Aliases: | None | ||
Description: | lectin, galactoside-binding, soluble, 3 [Source:HGNC Symbol;Acc:6563] |
Percent Identity: | 85.44 % |
Parental protein coverage: | 64.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QPGGPGAYPPPAQPSAPGAYPAAGPFGVPAGPLTVPYELPLPAGVMPRMLITILGTVKPNANRIALDFKK |
QPGGPG.YPPPA.PSAPGAYPAAG.FGV.AG.LT.PY.LP.PAG.MPRMLITILG.VKPNANRIALDFKK | |
Retrocopy | QPGGPGDYPPPAKPSAPGAYPAAGLFGVLAGLLTIPYQLPWPAGAMPRMLITILGKVKPNANRIALDFKK |
Parental | GNDVAFHFNPRFKEDNQRVIVCNTKVHDAWGREERHAQFPFKSGQPFKIQILVESDHFKVAVNDAHLLQY |
G.DVAFHFNPRFKE.NQ.VIVCNTKVH.A.GREERHAQFPFKSG..FKIQ.LVESDHFKVA.N.AHLLQY | |
Retrocopy | GDDVAFHFNPRFKEGNQIVIVCNTKVHGARGREERHAQFPFKSGKSFKIQVLVESDHFKVAFNYAHLLQY |
Parental | NHRMKNLNEITKLGISGD |
NH.MKN.NEI.KLGISGD | |
Retrocopy | NH*MKNQNEISKLGISGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015013 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005725 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016067 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009020 | 4 retrocopies |