RetrogeneDB ID: retro_mputfur_1160

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897029.1:5900712..5901301(+)
• Located in intron of: ENSMPUG00000011941

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AGPAT2
• Ensembl ID: ENSMPUG00000011249
• Aliases: None
• Description: 1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:325]

Sequence

>retro_mputfur_1160
TCCACTAAGGCCTATTGCAGCGTTCAGATGGTAGAGAATATGAATATCATCAGGTGGTTTGTCCAGGTCTTCAAGTACTT
ATAGGGCCTTCACTTTGAGACAGAGGGCCACCAGAAGATGAAAGTGAACCATCCTTGTGTCATCATTTCTAACCACCAGA
GTGACCTAAACATGATGGGCCTCTTGGAGCCCCTCTGCAAGTGTTGTGTAGAACACCAAGCAGCAGTTCTCTTCACGGGG
CCTGTAGACCTGATCATGTGTCTCAGCGACATCTTTATCAGCTTGCAGTGCTCCAGGACAAACTGTGACTGTGATGTCTG
TCATGGGACAGGACATGGCCAGGGAGAACCTCAAAATGTGGATCTACCCTGAGGATATGCAGAAGGATAGTTGGAACCTG
CTACCTTTCAAGAAAGATGCCTTTTACCTGGCAATTCACATCTTGCTGCCCATCATTTCTGTGGTATACCCCACATTCTT
CTCTTTCTATGACCCCAAAAGGGAGTTCTTCCTTTCGGGAACATTCAATGTGGAGATGTTGGATGTCATCCCCACCAGTG
GCCTCAGTATGACTGATGTCTCCAGGCTA

Alignment

ORF - retro_mputfur_1160 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.27 %
• Parental protein coverage: 76.95 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  STRTVCAHQ-ARRVRIIKWFVVKFKYVFGLRFEIKGLQKLEVDHPCVIISNHQSILDMMGLMEALPERCV
          ST...C..Q......II.WFV..FKY..GL.FE..G.QK..V.HPCVIISNHQS.L.MMGL.E.L...CV
Retrocopy STKAYCSVQMVENMNIIRWFVQVFKYL*GLHFETEGHQKMKVNHPCVIISNHQSDLNMMGLLEPLCKCCV

Parental  QIAKRELIFLGPVGLIMYLGGIFFINRQHSRT-AMTVMADVGERMVRDNLKVWIYPEGTRNDNGDLLPFK
          ........F.GPV.LIM.L..IF.I..Q.SRT...TVM...G..M.R.NLK.WIYPE....D...LLPFK
Retrocopy E-HQAAVLFTGPVDLIMCLSDIF-ISLQCSRT>TVTVMSVMGQDMARENLKMWIYPEDMQKDSWNLLPFK

Parental  KGAFYLAIQTQVPIIPVIYSSFSSFYNPKTKLFTSGTIKVEVLDAVPTRGLTVADVPKL
          K.AFYLAI....PII.V.Y..F.SFY.PK...F.SGT..VE.LD..PT.GL...DV..L
Retrocopy KDAFYLAIHILLPIISVVYPTFFSFYDPKREFFLSGTFNVEMLDVIPTSGLSMTDVSRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1160 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1160 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003965	1 retrocopy	retro_amel_982,
Canis familiaris	ENSCAFG00000019569	1 retrocopy	retro_cfam_1838,
Equus caballus	ENSECAG00000010932	1 retrocopy	retro_ecab_825,
Felis catus	ENSFCAG00000011607	1 retrocopy	retro_fcat_1778,
Mustela putorius furo	ENSMPUG00000011249	1 retrocopy	retro_mputfur_1160 ,
Ochotona princeps	ENSOPRG00000003291	1 retrocopy	retro_opri_578,
Ictidomys tridecemlineatus	ENSSTOG00000023422	1 retrocopy	retro_itri_5,