RetrogeneDB ID: | retro_itri_5 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393384.1:552704..553187(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023414 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AGPAT2 | ||
Ensembl ID: | ENSSTOG00000023422 | ||
Aliases: | None | ||
Description: | 1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:325] |
Percent Identity: | 53.46 % |
Parental protein coverage: | 72.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KRCVQIAKRELLFLGPVGLIMYLGGVFFINRQRSSTALTVMADLGERMVEENLKVWIYPEGTRNDNGDLL |
K.C.QI.K..L.FL.P......LG..F...........T..A.LGER.V.ENLKVWI.P.G..N.N.DLL | |
Retrocopy | KYCMQITKQKLMFLKPRASSCSLGPSFRQPKAPVLPQPTTIANLGERKVRENLKVWIIPKGMCNENRDLL |
Parental | PFKKGAFHLAVQAQVPIVPVVYSSFSSFYNLKTKLFTSGTIKVQVLDAVPTSGLTVADVPKLMDTCYHAM |
.FKK.AF.LA.Q...P..PVVYSSF.SFY.LKT..FTSGTIK.QVLD...TS.L......K..DTC.HAM | |
Retrocopy | SFKKCAFYLAIQ---PVLPVVYSSFPSFYKLKTRFFTSGTIKMQVLDGISTSSLSAV---KFIDTC-HAM |
Parental | RSTFFHLSRTPQENGAIEG |
.ST..H.S..PQEN....G | |
Retrocopy | KSTLLHVSTMPQENWPMKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003965 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019569 | 1 retrocopy | |
Equus caballus | ENSECAG00000010932 | 1 retrocopy | |
Felis catus | ENSFCAG00000011607 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007348 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000011249 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003291 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023422 | 1 retrocopy |
retro_itri_5 ,
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