RetrogeneDB ID: | retro_opri_578 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_18067:78769..79174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AGPAT2 | ||
Ensembl ID: | ENSOPRG00000003291 | ||
Aliases: | None | ||
Description: | 1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:HGNC Symbol;Acc:325] |
Percent Identity: | 80. % |
Parental protein coverage: | 63.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IISWFVRTFKYMYGLRFEVRGQPKLDVDQPCVIISNHQSILDMMGLMEVLPRRCVQVAKRELLFLGPVGL |
IISWFVRTFKY.Y.LRFEVRG.PKLD.D.PCVIISN.QSILDMMGLMEVLP.RCVQVAK.ELLFLG...L | |
Retrocopy | IISWFVRTFKYVYSLRFEVRGWPKLDID*PCVIISNRQSILDMMGLMEVLPWRCVQVAKWELLFLGSMRL |
Parental | IMYLGGVFFINRQQSSTAMSVMADLSERMVRENLKVWIYPEGTRNTNGDLLPFKKGAFYLAIQAQ |
IMYL.GVFF..RQQSSTAMSV.A.LSERMV.ENLKVWIYPEGT.NTNGDLLP..KG....A...Q | |
Retrocopy | IMYLSGVFFKSRQQSSTAMSVLASLSERMVLENLKVWIYPEGTCNTNGDLLPCRKGGLRMAFIEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003965 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019569 | 1 retrocopy | |
Equus caballus | ENSECAG00000010932 | 1 retrocopy | |
Felis catus | ENSFCAG00000011607 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007348 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000011249 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003291 | 1 retrocopy |
retro_opri_578 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000023422 | 1 retrocopy |