RetrogeneDB ID: | retro_mputfur_1607 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897348.1:326517..327040(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000000064 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH2 | ||
Ensembl ID: | ENSMPUG00000016000 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 2, NAD (mitochondrial) [Source:HGNC Symbol;Acc:6971] |
Percent Identity: | 65.19 % |
Parental protein coverage: | 50.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | ALARPAGAALRRSFSTSAQKNAKVAVLG-ASGGIGQPLALLLK-NSPLVSRLTLYDIAHTPG-VAADLSH |
ALA.PA..A.............KVAVLG...GGIGQPL.LLLK.N.PLVS.L..Y..AH.P..VA.D.SH | |
Retrocopy | ALAWPARTAPTAASAPGPRTVCKVAVLG<TFGGIGQPLSLLLK<NIPLVSLLNVYNVAHVPE<VATDQSH |
Parental | IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRD-DLFNTNASIVATLTAACAQHCPEAMICI |
IE..AT.KGYL.P.QL.DCLK.CDVVVIP.GV.RKPGMT.D..LF.TNA..VATLT.ACAQHCPEAM.C. | |
Retrocopy | IEIKATMKGYLEPKQLSDCLKNCDVVVIPVGVLRKPGMTQD<YLFQTNATVVATLTTACAQHCPEAMSCT |
Parental | ISNPVNSTIPIAT-EVFKKHGAYNPNKIFGVTTLDIVRANT |
..N..NSTIPI.T...FKKHG.YNPNKIFGVTTL.I...NT | |
Retrocopy | TLNVINSTIPITT<SIFKKHGTYNPNKIFGVTTLGIIKTNT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010846 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013515 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017795 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013680 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016000 | 2 retrocopies |
retro_mputfur_1607 , retro_mputfur_478,
|
Mus musculus | ENSMUSG00000019179 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009705 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003397 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003190 | 1 retrocopy | |
Drosophila melanogaster | FBgn0262559 | 2 retrocopies |