RetrogeneDB ID: | retro_mputfur_478 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896912.1:7646735..7647544(+) | ||
Located in intron of: | ENSMPUG00000003430 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDH2 | ||
Ensembl ID: | ENSMPUG00000016000 | ||
Aliases: | None | ||
Description: | malate dehydrogenase 2, NAD (mitochondrial) [Source:HGNC Symbol;Acc:6971] |
Percent Identity: | 71.12 % |
Parental protein coverage: | 77.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | HTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMT-RDDLFNTNASIVATLTAAC |
HTP.VAADLS..E..AT.KG.L.PE.LPDC.KGC..VVIPAG.PRKP.MT.R.DL.NT.A.IVATL...C | |
Retrocopy | HTP*VAADLSCTEIGATGKGCLTPE*LPDCSKGCHGVVIPAGAPRKPCMT<RGDLSNTSAPIVATLATFC |
Parental | AQHCPEA-MICIISNPVNSTIPIATEVFKKHGAY-NPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPV |
..HCPEA.M..I.SN.VNS.IP.ATE.FKKHGA....NKIFGVTTLDI.RA.TFI.EL.GL.PA..NVPV | |
Retrocopy | PWHCPEA<MSGILSNLVNSIIPMATETFKKHGAH<HLNKIFGVTTLDIARAKTFIIELRGLAPACINVPV |
Parental | IGGHAGKTII-PLISQCTPKVDLP-QDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMA-YAGARFVFSLV |
.GGHAGKT.I.P.IS..T.KVD.P.Q.QLTAVTG.IQEA..E.VK..A.AGSA.LSMA.Y.GA.FVFSLV | |
Retrocopy | TGGHAGKTVI<PPISPRTLKVDVP>QNQLTAVTGKIQEAHIEEVKV*ARAGSAALSMA<YVGAEFVFSLV |
Parental | DAMNGKEGVVECSFVKSQEADCGYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKG |
.AMN.KEGVV.C.F.KSQE.D..YFSTPL.LG.KGI.KN.GI.KISP..EKMIAEAIPELKASIK.G | |
Retrocopy | EAMNRKEGVVQCFFIKSQETDGAYFSTPLFLGAKGI*KNPGIDKISPSKEKMIAEAIPELKASIKNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010846 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013515 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017795 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013680 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016000 | 2 retrocopies |
retro_mputfur_1607, retro_mputfur_478 ,
|
Mus musculus | ENSMUSG00000019179 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009705 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003397 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003190 | 1 retrocopy | |
Drosophila melanogaster | FBgn0262559 | 2 retrocopies |