Parental gene: | MDH2, ENSCAFG00000013515 |
| Aliases: | None |
| Description: | Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F1PYG8] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 6:7389389..7405129(+) |
>ENSCAFG00000013515
ATGCTCTCCGCCCTCGCCCGCCCTGCCGGCGCCGCTCTCCGCCGCAGCTTCAGCACCTCGGCCCAGAACAATGCTAAAGT
AGCTGTGCTTGGGGCTTCCGGAGGAATTGGGCAGCCCCTTGCGCTGCTTCTCAAGAACAGCCCCTTAGTGAGCCGCCTGA
CCCTCTACGATATTGCTCATACACCCGGAGTGGCCGCAGATCTGAGCCACATCGAGACCAGAGCAACCGTGAAAGGCTAC
CTCGGACCTGAGCAGCTGCCGGATTGCCTCAAAGGCTGCGATGTTGTGGTTATTCCAGCTGGAGTCCCAAGAAAACCAGG
CATGACACGGGATGACCTGTTCAACACCAATGCCTCAATTGTGGCCACCCTGACTGCTGCCTGCGCCCAGCATTGCCCCG
AGGCCATGATCTGCGTCATTTCAAATCCGGTCAACTCCACCATCCCAATTGCAACGGAGGTTTTCAAGAAACACGGAGCT
TACGACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCAGGGCCAACACTTTCATTGCAGAACTAAAGGGTTT
GGATCCTGCGCGAGTCAATGTTCCTGTCATTGGCGGTCATGCTGGGAAGACCATCATCCCCCTGATCTCTCAGTGCACTC
CCAAGGTGGACCTTCCCCAGGACCAGCTGACAGCCGTCACTGGGCGGATTCAGGAGGCCGGCACGGAGGTGGTGAAAGCC
AAAGCTGGAGCAGGCTCTGCCACCCTGTCCATGGCATACGCTGGAGCTCGGTTTGTCTTCTCCCTTGTGGATGCAATGAA
TGGGAAGGAAGGAGTTGTCGAATGTTCCTTTGTTAAATCCCAGGAAGCAGACTGTGCCTATTTCTCCACACCATTACTGC
TGGGGAAAAAGGGCATCGAGAAGAATCTAGGCATTGGCAAGATCTCCCCTTTTGAAGAGAAGATGATAGCAGAAGCCATC
CCCGAGCTGAAGGCCTCCATCAAAAAGGGAGAGGAGTTTGTGAAGAACATGAAATGA
ATGCTCTCCGCCCTCGCCCGCCCTGCCGGCGCCGCTCTCCGCCGCAGCTTCAGCACCTCGGCCCAGAACAATGCTAAAGT
AGCTGTGCTTGGGGCTTCCGGAGGAATTGGGCAGCCCCTTGCGCTGCTTCTCAAGAACAGCCCCTTAGTGAGCCGCCTGA
CCCTCTACGATATTGCTCATACACCCGGAGTGGCCGCAGATCTGAGCCACATCGAGACCAGAGCAACCGTGAAAGGCTAC
CTCGGACCTGAGCAGCTGCCGGATTGCCTCAAAGGCTGCGATGTTGTGGTTATTCCAGCTGGAGTCCCAAGAAAACCAGG
CATGACACGGGATGACCTGTTCAACACCAATGCCTCAATTGTGGCCACCCTGACTGCTGCCTGCGCCCAGCATTGCCCCG
AGGCCATGATCTGCGTCATTTCAAATCCGGTCAACTCCACCATCCCAATTGCAACGGAGGTTTTCAAGAAACACGGAGCT
TACGACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCAGGGCCAACACTTTCATTGCAGAACTAAAGGGTTT
GGATCCTGCGCGAGTCAATGTTCCTGTCATTGGCGGTCATGCTGGGAAGACCATCATCCCCCTGATCTCTCAGTGCACTC
CCAAGGTGGACCTTCCCCAGGACCAGCTGACAGCCGTCACTGGGCGGATTCAGGAGGCCGGCACGGAGGTGGTGAAAGCC
AAAGCTGGAGCAGGCTCTGCCACCCTGTCCATGGCATACGCTGGAGCTCGGTTTGTCTTCTCCCTTGTGGATGCAATGAA
TGGGAAGGAAGGAGTTGTCGAATGTTCCTTTGTTAAATCCCAGGAAGCAGACTGTGCCTATTTCTCCACACCATTACTGC
TGGGGAAAAAGGGCATCGAGAAGAATCTAGGCATTGGCAAGATCTCCCCTTTTGAAGAGAAGATGATAGCAGAAGCCATC
CCCGAGCTGAAGGCCTCCATCAAAAAGGGAGAGGAGTTTGTGAAGAACATGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 64 .31 RPM |
| SRP017611_kidney | 107 .84 RPM |
| SRP017611_liver | 37 .42 RPM |
| SRP012049_cerebellum | 50 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010846 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017795 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000013680 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000016000 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000019179 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009705 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000003397 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000003190 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000014834 | possible_ortholog | 1 retrogene | |
| Drosophila melanogaster | FBgn0262559 | ortholog_many2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_41 | 99.11 | 99.70 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_182 | 94.14 | 85.80 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000013515 retrocopies