RetrogeneDB ID: retro_mputfur_182

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896908.1:15095793..15096423(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019165
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010179
• Aliases: None
• Description: Proteinral transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:UniProtKB/TrEMBL;Acc:G9K3N0]

Sequence

>retro_mputfur_182
CAGGAGAATGGGGAAGAGGAAATAGGGAAGTTGTTGCTGGTGGAATTGTCCAGAATTATTGATTCAGTCTTTCTATCAAA
ATGTGAAAATAAATGCAAGATTTGGGGAATTGACACAGAGAGTCCCATTATACAAGTGGGCAGCTGTGTCCTTGCTGGAG
AGTATGAAGACACTCTTGGAACCTGTGTTACATTTGAAACAAATGTTGAACATGGTGATGCAGAAGGCAGTAATACAATA
ATGCTAAAATATAAACGTCGTACAATGAAGAAGTTCAGCATGACAAGCACTCTTTTGACAGAAAAGAAGGAAGGAGAAGA
AAGCCTAGGTGGTACGAAATGGCCACAAATCAAGGACGATGATTTCTGCTGTAGACCCAACATGATTTGTAGCTTTCTGC
ATGAAAATGAAGATGACGACGTTGTAGCTCTAGCCTCAGATAAATCTTTGGTGTTGGAAGAGCAAGAGATTCAAAGGAAA
GATAATTCAAACCTGAGTTATGAACACAGGAAATCACTGAACTTGGAAGAAAAGAATTCTGGCCCTCTTACTGATATCCC
TTCTTTTGAGATGGAAGGTTATTATTTTTTTTATGGAAACTCAAGATACTGCCTTGAAAATCACTCTTAG

Alignment

ORF - retro_mputfur_182 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.96 %
• Parental protein coverage: 89.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEEEEEEAEQLVLVELSGIIDSEFLSKCENKCKILGIDTERPILQVDSYVFAGEYEDTLGTCVIFEENVE
          .E..EEE...L.LVELS.IIDS.FLSKCENKCKI.GIDTE.PI.QV.S.V.AGEYEDTLGTCV.FE.NVE
Retrocopy QENGEEEIGKLLLVELSRIIDSVFLSKCENKCKIWGIDTESPIIQVGSCVLAGEYEDTLGTCVTFETNVE

Parental  PGDTEGSDKTVLKYKCHTMKKLSMTRTLLTEKKEGEENIGGVEWLQIKDNEFSYRPNMICSFLHENEDDD
          .GD.EGS....LKYK..TMKK.SMT.TLLTEKKEGEE..GG..W.QIKD..F..RPNMICSFLHENEDDD
Retrocopy HGDAEGSNTIMLKYKRRTMKKFSMTSTLLTEKKEGEESLGGTKWPQIKDDDFCCRPNMICSFLHENEDDD

Parental  VTP-ASDKSLELEDQEIPTKNNSNLGYEQGKSLNLEVENSGPLIDIPSSETEGYVF
          V...ASDKSL.LE.QEI..K.NSNL.YE..KSLNLE..NSGPL.DIPS.E.EGY.F
Retrocopy VVALASDKSLVLEEQEIQRKDNSNLSYEHRKSLNLEEKNSGPLTDIPSFEMEGYYF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_182 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_182 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 28 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003535	1 retrocopy	retro_amel_370,
Choloepus hoffmanni	ENSCHOG00000001496	1 retrocopy	retro_chof_1436,
Callithrix jacchus	ENSCJAG00000005248	2 retrocopies	retro_cjac_3118, retro_cjac_4098,
Dasypus novemcinctus	ENSDNOG00000014270	4 retrocopies	retro_dnov_1228, retro_dnov_1654, retro_dnov_377, retro_dnov_931,
Homo sapiens	ENSG00000155115	3 retrocopies	retro_hsap_3714, retro_hsap_4728, retro_hsap_4735,
Gorilla gorilla	ENSGGOG00000010681	1 retrocopy	retro_ggor_2511,
Myotis lucifugus	ENSMLUG00000013919	1 retrocopy	retro_mluc_897,
Macaca mulatta	ENSMMUG00000012709	3 retrocopies	retro_mmul_1700, retro_mmul_2520, retro_mmul_2524,
Monodelphis domestica	ENSMODG00000017924	1 retrocopy	retro_mdom_876,
Mustela putorius furo	ENSMPUG00000010179	1 retrocopy	retro_mputfur_182 ,
Nomascus leucogenys	ENSNLEG00000012846	3 retrocopies	retro_nleu_1237, retro_nleu_2122, retro_nleu_2552,
Pan troglodytes	ENSPTRG00000018502	3 retrocopies	retro_ptro_2516, retro_ptro_3145, retro_ptro_3149,
Tupaia belangeri	ENSTBEG00000017031	4 retrocopies	retro_tbel_2653, retro_tbel_3585, retro_tbel_631, retro_tbel_943,