RetrogeneDB ID: | retro_ptro_3145 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:95788956..95789417(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF3C6 | ||
Ensembl ID: | ENSPTRG00000018502 | ||
Aliases: | None | ||
Description: | General transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:UniProtKB/TrEMBL;Acc:K7B6B2] |
Percent Identity: | 69.14 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AADERSPEDGEDEEEEEQLVLVELSGIIDSDF-LSKCENKCKVLGIDTERPILQVDSCVFAGEYEDTLGT |
AA...SPE.G....EEE.L....L.....S.F..SKCEN.CK...I..ERPILQVDS..FAGEY.DTL.T | |
Retrocopy | AAKKWSPENG----EEEELKAEMLIPVELSGF<FSKCENRCKIWRIYNERPILQVDSYLFAGEYKDTLRT |
Parental | CVIFEENVEHADTEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEENIGGVEWLQIK-DNDFSYRPNMIC |
..IFEENVE..D.EGNNKTVLKYKCHTMKKLSM..TLLTEKKEGEENIGG.EWL.I...NDFSYRP.MIC | |
Retrocopy | YAIFEENVENVDAEGNNKTVLKYKCHTMKKLSMV-TLLTEKKEGEENIGGMEWLIIR<ENDFSYRPKMIC |
Parental | NFLHENEDEEV-VASAPDKSLE |
..LH.NEDEEV.VAS.PDK.LE | |
Retrocopy | SLLHKNEDEEV>VASTPDKLLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .55 RPM |
SRP007412_heart | 0 .00 RPM | 40 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .49 RPM |
SRP007412_liver | 0 .00 RPM | 22 .85 RPM |
SRP007412_testis | 0 .00 RPM | 44 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4728 |
Macaca mulatta | retro_mmul_2520 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003535 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005248 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000014270 | 4 retrocopies | |
Homo sapiens | ENSG00000155115 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000010681 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013919 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012709 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000017924 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010179 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012846 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018502 | 3 retrocopies |
retro_ptro_2516, retro_ptro_3145 , retro_ptro_3149,
|