RetrogeneDB ID: retro_mputfur_313

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896903.1:2969081..2969558(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000012735
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TM2D3
• Ensembl ID: ENSMPUG00000010985
• Aliases: None
• Description: TM2 domain containing 3 [Source:HGNC Symbol;Acc:24128]

Sequence

>retro_mputfur_313
ACTGAGCCGCTGGCTCAGTCAATAAAGGATCCGGGCCCAACACGTACTTTCACAGTAGTTCCCAGGGCAGCAGAAAGTAC
TGATATCCCACCTTATGTGATGAAGTGTCCAAGTAATGGTTTGTGTAGCAAACTTCCTGCAGACTGTGTAGAATGCAAGA
CAAATTTCTCCTGTGTCTATGGGAAACCTGTCACCTTTGACTGCACAGTCAAACCTTCTGTTACCTGTGTTGATCAAGAC
TTCAAATCCCAAAAGAACTTCATCATCAACATGACTTGCAGGTTTTGCTGGCAGCTTCCAGAAATGGATTATGAGTGTTC
CATTTCCACCAGCTGCATGACGGTGTCCTATCCCCGGCAGCGTTACATGGCCAACTGCACCGTGCGGGACCACATTTATT
GCCTGGGTAACTGTACTTTTCCAAAGATGCTGTACTGCAACTGGACTGGAGGTAATAAGTGGTCTACTGCTCTGGCA

Alignment

ORF - retro_mputfur_313 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.97 %
• Parental protein coverage: 63.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SQPLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTV
          ..PLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTV
Retrocopy TEPLAQSIKDPGPTRTFTVVPRAAESTDIPPYVMKCPSNGLCSKLPADCVECKTNFSCVYGKPVTFDCTV

Parental  KPSVTCVDQDFKSQKNFIINMTCRFCWQLPETDYECSNSTSCMTVSCPRQRYMANCTVRDHIHCLGNRTF
          KPSVTCVDQDFKSQKNFIINMTCRFCWQLPE.DYECS.STSCMTVS.PRQRYMANCTVRDHI.CLGN.TF
Retrocopy KPSVTCVDQDFKSQKNFIINMTCRFCWQLPEMDYECSISTSCMTVSYPRQRYMANCTVRDHIYCLGNCTF

Parental  PKMLYCNWTGGYKWSTALA
          PKMLYCNWTGG.KWSTALA
Retrocopy PKMLYCNWTGGNKWSTALA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_313 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_313 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017340	1 retrocopy	retro_cjac_3233,
Homo sapiens	ENSG00000184277	1 retrocopy	retro_hsap_1138,
Gorilla gorilla	ENSGGOG00000011598	1 retrocopy	retro_ggor_887,
Macaca mulatta	ENSMMUG00000000277	1 retrocopy	retro_mmul_884,
Mustela putorius furo	ENSMPUG00000010985	1 retrocopy	retro_mputfur_313 ,
Nomascus leucogenys	ENSNLEG00000000529	1 retrocopy	retro_nleu_937,
Pan troglodytes	ENSPTRG00000007515	1 retrocopy	retro_ptro_775,
Tarsius syrichta	ENSTSYG00000004536	1 retrocopy	retro_tsyr_1116,