RetrogeneDB ID: | retro_nleu_937 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397276.1:21483659..21484217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TM2D3 | ||
Ensembl ID: | ENSNLEG00000000529 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.32 % |
Parental protein coverage: | 76.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | STEIPPYVMKCPSNGLCSRLPADCIDCTTNFSCIYGKPVTFDCAVKPSVTCVDQDFKSQKNFIINMTCRF |
..........C.SNGLCSR..A..IDCTTN..C.YGK.VTFDCA.KPSV.CVD...KSQ.NFIIN.T..F | |
Retrocopy | AVKVRKFHLLCSSNGLCSRYSAEFIDCTTNVPCVYGKLVTFDCAMKPSVACVD*ELKSQSNFIINVT*-F |
Parental | CWQLPETDYECTNSTSCMTVSCPRQRYPANCTVRDHVHCLGNRTFPKMLYCNWTGGYKWSTALALSITLG |
CW.LPET.YEC.NST.CM..SCP.....ANC............T..KMLY.NW.GGYKWS.ALALSITLG | |
Retrocopy | CWKLPETEYECFNSTNCMR-SCPQRHHTANCMINTFMTWV--TTLFKMLY*NWAGGYKWSIALALSITLG |
Parental | GFGADRFYLGQWREGLGKLFSFGGLGIWTLIDVLLIGVGYVGPADGSLYI |
GFGAD.FYL.QW.EGLGKLFSF.GL.IWTLID.LLIGVGY.GPADGS.YI | |
Retrocopy | GFGADHFYLDQWQEGLGKLFSFSGLEIWTLIDILLIGVGYIGPADGSSYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017340 | 1 retrocopy | |
Homo sapiens | ENSG00000184277 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011598 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000277 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010985 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000529 | 1 retrocopy |
retro_nleu_937 ,
|
Pan troglodytes | ENSPTRG00000007515 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004536 | 1 retrocopy |