RetrogeneDB ID: | retro_mputfur_483 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896913.1:4545887..4546088(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSMPUG00000008550 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 52.94 % |
Parental protein coverage: | 51.13 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | APAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEVANQEAKDDLPAENGETKNESPASDEAGEKE |
APA.VE..PKK.A.K.KSSD.KV.TK.......KQAE.A........PAENGET..ESPA.D.....E | |
Retrocopy | APANVETQPKKVAGKEKSSD*KVPTKRGKES*RKQAEGAGR-GPAGFPAENGETEKESPAADDTKSDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000002336 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000020972 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000008550 | 3 retrocopies |
retro_mputfur_252, retro_mputfur_371, retro_mputfur_483 ,
|
Rattus norvegicus | ENSRNOG00000048226 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000050978 | 5 retrocopies |