RetrogeneDB ID: | retro_nleu_1023 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397278.1:35550782..35551344(-) | ||
Located in intron of: | ENSNLEG00000012002 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD2 | ||
Ensembl ID: | ENSNLEG00000011061 | ||
Aliases: | None | ||
Description: | Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:G1RJQ3] |
Percent Identity: | 57.59 % |
Parental protein coverage: | 84.68 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | HSLPDLPYDYGALEPHINAQIMQLHHSKHHAA-YVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGG |
HSL..L.YDY.AL.P..N..IMQL.H.K......VNNL....EK..E.L.KGDV..QI.LQPAL.F.GG. | |
Retrocopy | HSLLSLSYDYSALGPNVNVHIMQLNHIKCQVI<WVNNLTAFKEK*KEVLVKGDVRIQIILQPALNFSGGD |
Parental | HINHTIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAAC |
HI..TI..TNLS..G.G..KGE.L.AIK..F.SFD..KEKLT..SV..Q.S..GWLGF.K......I.AC | |
Retrocopy | HITLTIL*TNLSLSGSGGLKGEFLGAIKYYFCSFD*LKEKLTDVSVSMQSSSCGWLGFIK*K-NS*IIAC |
Parental | PNQDPLQGTTGLIPLLGIDVWEHAYYL-QYKNVRPDYLKA-IWNVINWENV |
PNQDPLQ...GLI.LLGI.VW...Y.L...KNVR.DY.KA..W..IN.ENV | |
Retrocopy | PNQDPLQRSSGLILLLGIGVWKFSYSL>SIKNVRLDYPKA>FWSIIN*ENV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |