RetrogeneDB ID:

retro_ttru_265

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_173:317465..317893(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000014364
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_265
CAGGTAGCTCTCCAGCCTGCACTAAAGTTCAGTGTAGGAGGACCTGTCAACCCTTTCCCATTTTAGGGACAAACTCAGCC
CTAATGATGGGTGGAGAACCCCAAAGGGGAGTGGATGGAAGCTAGTAAAATGTTACTTTATTTTCCTTTGACTGATTGAA
GGAGAAGTCGACAGCTGTATCTCTTGGCATTCAACGTTCAGATTGGGGTTGGCCTGGTTTCATTAAGTTACAAGGACACT
TACAAATTGCTGCCTGTTCTAATCAGGATCCATTACAAGGAAGAACAGGTCTTTTCCACTTTGGGGGATTGGTATGGTAG
TATGCTTACTACCTTCAGTATAAAAGTGTCAGATCTGATTATCTAAAAGCTGTTTGGAATGTAATCAACTGGGAGAATGT
AACTGAAAGATACATGGTTTGCAAACAA

ORF - retro_ttru_265 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.07 %
Parental protein coverage: 97.26 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQVALQPAIKFNGGGHINH-SIFWTNLSPNGGGE-PKGELLEAIKHDF-GSFKNFKEKLTAVSVGVQGSGW
QVALQPA.KF..GG..N..S.F...LSPN.G...PKG......K..F..SF...KEK.TAVS.G.Q.S.W
RetrocopyQVALQPALKFSVGGPVNP>SHFRDKLSPNDGWRTPKGSGWKLVKCYF>FSFD*LKEKSTAVSLGIQRSDW
ParentalGWLGFSKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVISWENVAARY
GW.GF.K.QG.LQIAACSNQDPLQG.TGL....G..VW..AYYLQYK.VR.DYLKA.WNVI.WENV..RY
RetrocopyGWPGFIKLQGHLQIAACSNQDPLQGRTGLFHFGGL-VW*YAYYLQYKSVRSDYLKAVWNVINWENVTERY
ParentalTACKK
..CK.
RetrocopyMVCKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_265 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_265 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 24 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000154661 retrocopy
retro_amel_786,
Canis familiaris ENSCAFG000000006711 retrocopy
retro_cfam_1795,
Choloepus hoffmanni ENSCHOG000000032154 retrocopies
retro_chof_1952, retro_chof_1966, retro_chof_2620, retro_chof_937,
Callithrix jacchus ENSCJAG000000116641 retrocopy
retro_cjac_3032,
Dasypus novemcinctus ENSDNOG000000079071 retrocopy
retro_dnov_1653,
Equus caballus ENSECAG000000117972 retrocopies
retro_ecab_70, retro_ecab_840,
Echinops telfairi ENSETEG000000164001 retrocopy
retro_etel_731,
Felis catus ENSFCAG000000028431 retrocopy
retro_fcat_1200,
Homo sapiens ENSG000001120961 retrocopy
retro_hsap_430,
Gorilla gorilla ENSGGOG000000082121 retrocopy
retro_ggor_419,
Myotis lucifugus ENSMLUG000000122421 retrocopy
retro_mluc_528,
Monodelphis domestica ENSMODG000000075211 retrocopy
retro_mdom_373,
Mustela putorius furoENSMPUG000000050451 retrocopy
retro_mputfur_1382,
Nomascus leucogenys ENSNLEG000000110611 retrocopy
retro_nleu_1023,
Otolemur garnettii ENSOGAG000000171001 retrocopy
retro_ogar_1123,
Pongo abelii ENSPPYG000000171431 retrocopy
retro_pabe_292,
Pan troglodytes ENSPTRG000000187571 retrocopy
retro_ptro_327,
Pteropus vampyrus ENSPVAG000000053021 retrocopy
retro_pvam_288,
Rattus norvegicus ENSRNOG000000190481 retrocopy
retro_rnor_2221,
Sarcophilus harrisii ENSSHAG000000147951 retrocopy
retro_shar_210,
Ictidomys tridecemlineatus ENSSTOG000000087381 retrocopy
retro_itri_1432,
Tupaia belangeri ENSTBEG000000021001 retrocopy
retro_tbel_665,
Tarsius syrichta ENSTSYG000000004571 retrocopy
retro_tsyr_183,
Tursiops truncatus ENSTTRG00000014364 1 retrocopy
retro_ttru_265 ,


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