RetrogeneDB ID:

retro_nleu_1437

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397293.1:21547359..21548515(+)
Located in intron of:ENSNLEG00000004341
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RIMKLB
Ensembl ID:ENSNLEG00000002201
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1437
TGTAGTTCTGTGGCTGCCAAGTTGTGGTTTTCGACAGATCATCACATCAGGGAAGACTATCCTCAAAAACAGATTTTACG
AGCATTGAAGGCCAAACGTTGTGAGGAGGAACTGGACTTTAGGGCTGTGGTGATGGATGAGGTGGTGCTGACAATCGAGA
AAGGAAACTTGGGTCTGCGGATCAATGGAGAGCTAATCACTGCCTACCCACAAGTGGTGGTAGTCAGAGTACCAACCCCT
TGGGTGCAAAGTGATAGTGACATCACTGTTTTGTGCCATCTAGAGAAGATGGGATGCCAGTTAGTGAACCGACCTCAAGC
CATCCTGAACTGCGTTAATAAGTTCTGGATATTTCAAGAGTTGGCTGGCCACGGTGTTCCTCTGCCAGATACTTTCTCTT
ATGGTGGCCATGAAAATTTTGCTAAAATGATTGATGAAGCTGAAGTACTGGAGTTCCCAATGGTAGTAAAGAATACGCGG
GGTCACAGAGGTAAAGCCGTTTTCTTGGCTCGAGATGAGCACCATTTGGCTGATCTAAGCCATCTTATTTGCCATGAAGC
ACCATACTTGTTCCAGAAGTATGTTAAAGAGTCACATGGACGGGATGTACATGTCATTGTCATGGGAGACCGTGTGGTTG
GCACCATGTTACATTGTTCAACAGATGGGAGAATGCAGAGCAACTGCTCATTAGGTGGTGTGGGGAATGATGTGCTCATT
GAGTGAACAAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGGACAGATGTGTGTGGCATTGACCTGTTGATGA
AAGATGGCGGCTCCTTCTGTGTCTGTGAGGCCAATGCAAATGTAGGTTTCATCACCTTTGATAAGGCTTGTAATCTAGAT
GTAGCTGGTATCATAGCAGACTATGCCGCCTCCCTTCTACCCTCTGGCTGGCTCACCCGGCGTATGTCCCTGCTCTCTGT
GGTGTCCACTGCCAGTGAGACTAGTGAGCTGGAGCTGGGTCCTCCAGCCAGCACTGCTGTTGACAACATGAGTGCAAGTT
CCGGCTCTGTTGACAGTGACCCTGAAAGCATGGAGCAAGAGCTGCTCACCAAGCTCCCAGGGGGCCTGTTCAACATGAAC
CAGCTGCTAGCCAATGAAATCAAACTACTGGTGGAC

ORF - retro_nleu_1437 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.97 %
Parental protein coverage: 99.74 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTIEQGNLGLRINGELITAYP
CSSVAAKLWF.TD..IREDYPQK.ILRALKAK.CEEELDFRAVVMDEVVLTIE.GNLGLRINGELITAYP
RetrocopyCSSVAAKLWFSTDHHIREDYPQKQILRALKAKRCEEELDFRAVVMDEVVLTIEKGNLGLRINGELITAYP
ParentalQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHENF
QVVVVRVPTPWVQSDSDITVL.HLEKMGC.L.NRPQAILNCVNKFW.FQELAGHGVPLPDTFSYGGHENF
RetrocopyQVVVVRVPTPWVQSDSDITVLCHLEKMGCQLVNRPQAILNCVNKFWIFQELAGHGVPLPDTFSYGGHENF
ParentalAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKAPFGLISHLIRHEAPYLFQKYVKESHGRDVRVIVVGG
AKMIDEAEVLEFPMVVKNTRGHRGKAVFLARD.......SHLI.HEAPYLFQKYVKESHGRDV.VIV.G.
RetrocopyAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDEHHLADLSHLICHEAPYLFQKYVKESHGRDVHVIVMGD
ParentalRVVGTMLRCSTDGRMQSNCSLGGV-GMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMKDDGSFCVCEANA
RVVGTML.CSTDGRMQSNCSLGGV.GMMCSLSEQGKQLAIQVSNILG.DVCGIDLLMKD.GSFCVCEANA
RetrocopyRVVGTMLHCSTDGRMQSNCSLGGV>GMMCSLSEQGKQLAIQVSNILGTDVCGIDLLMKDGGSFCVCEANA
ParentalNVGFIAFDKACNLDVAGIIADYAASLLPSGRLTRRMSLLSVVSTASETSEPELGPPASTAVDNMSASSSS
NVGFI.FDKACNLDVAGIIADYAASLLPSG.LTRRMSLLSVVSTASETSE.ELGPPASTAVDNMSASS.S
RetrocopyNVGFITFDKACNLDVAGIIADYAASLLPSGWLTRRMSLLSVVSTASETSELELGPPASTAVDNMSASSGS
ParentalVDSDPESTERELLTKLPGGLFNMNQLLANEIKLLVD
VDSDPES.E.ELLTKLPGGLFNMNQLLANEIKLLVD
RetrocopyVDSDPESMEQELLTKLPGGLFNMNQLLANEIKLLVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1437 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG000000003321 retrocopy
Nomascus leucogenys ENSNLEG00000002201 2 retrocopies
retro_nleu_1422, retro_nleu_1437 ,
Rattus norvegicus ENSRNOG000000238141 retrocopy



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