RetrogeneDB ID: | retro_nleu_1548 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397298.1:21090566..21091105(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRR3 | ||
Ensembl ID: | ENSNLEG00000005104 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.57 % |
Parental protein coverage: | 71.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NQHQPPTQQQPPLPEREETGDEEDGSPIGPPSLLG-PP-PMANGKPGDPKSALHRGPPGSRGPLIPPLLS |
NQHQPP.QQQPPLP.RE.TGD.EDGSPIG.PSLL..PP.PMA.GKP.DPKSA.HR.PPG.R..LIPPLLS | |
Retrocopy | NQHQPPPQQQPPLPKREKTGDDEDGSPIGSPSLLS<PP<PMASGKPDDPKSAPHRSPPGARESLIPPLLS |
Parental | LPPPPWGRGPIRRGLGPRSSPYGRGWWGVNAEPPFPGPGHGG-PTRGSFHKEQRNPRRLKSWSLIKNTCP |
LPPPP.GRGP...GLGPR..PY..GWWGVNAEPPFPGPGHGG.P....F.K........K...L...... | |
Retrocopy | LPPPPQGRGPVPGGLGPRPNPYNCGWWGVNAEPPFPGPGHGG>PPGEAFTKNRETLKGSKA-GLLSRIPA |
Parental | PKDDPQVMEDKSDRPVCRHFAKKGHCRYEDLCAFYHPGVNGPPL |
..DDPQVMEDKS...VC.HFAKKGHC.YEDLCAF.HPG.N.PPL | |
Retrocopy | H*DDPQVMEDKSHHLVCGHFAKKGHC*YEDLCAFHHPGINSPPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000022770 | 1 retrocopy | |
Felis catus | ENSFCAG00000025918 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014604 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008758 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013893 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005104 | 1 retrocopy |
retro_nleu_1548 ,
|
Otolemur garnettii | ENSOGAG00000004430 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016409 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017929 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002747 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011829 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000166 | 2 retrocopies |