RetrogeneDB ID:

retro_nleu_233

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397261.1:62945650..62946193(-)
Located in intron of:ENSNLEG00000017824
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PARK7
Ensembl ID:ENSNLEG00000008790
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_233
TTGGCTAAAGGAGCAGAGGAAATGGAGACAGTCATCCTGTAGATGTCATGAGGTGAGCTGGGATTAAGGTCACCATTGCA
GGTCTGGCTGGAAAAGACCCAGTACAGTGTAGCCTTGATGTTTTCATTTGTCCTGATGATGCCAGTCTTGAAGACGCAAA
AAAAGAGGGACCATATGACATAGTAGTTCTACCAGGAGGTAATCTGGGTGCACAGAATTTATCTGAGTCTGCTTCTGTGA
AGGAGATACTAAGGACCAGGAAAACCAGAAGGGCCTTATAGCCACCGTCTGTGCAGGTCCTACTGTTCTGATGGCTCATG
AAATCAGTTTTGGAAGTAAAGTTACAACACTCCTGCTCGCTAAGGACAAAATGATGAATGGAAGTCATTACACCTACTCT
GAGAATCATGTGGAAAAGGACGGCCTGAAATTCTTACAAGCCCAGGGCCTAGGACCAGCTTTGAGTTTGTGCTTACAATT
GTTGAAGCCCTGAGCAGCAAGGAGATGGCAGCTCAAGTGAAGGCTCCACTTGTTCTTAAAGAC

ORF - retro_nleu_233 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.7 %
Parental protein coverage: 95.24 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLAKGAEEMETVI-PVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPD-ASLEDAKKEGPYDVVVLPGGNL
LAKGAEEMETVI.PVDVMR.AGIKVT.AGLAGKDPVQCS.DV.ICPD.ASLEDAKKEGPYD.VVLPGGNL
RetrocopyLAKGAEEMETVI<PVDVMR*AGIKVTIAGLAGKDPVQCSLDVFICPDDASLEDAKKEGPYDIVVLPGGNL
ParentalGAQNLSESAAVKEIL-KEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRV
GAQNLSESA.VKEIL.K.QEN.KGLIA..CAGPT.L.AHEI.FGSKVTT..LAKDKMMNG.HYTYSEN.V
RetrocopyGAQNLSESASVKEIL<KDQENQKGLIATVCAGPTVLMAHEISFGSKVTTLLLAKDKMMNGSHYTYSENHV
ParentalEKDGL-ILTSRG-PGTSFEFALAIVEALNGKEVAAQVKAPLVLKD
EKDGL..L...G.P.TSFEF.L.IVEAL..KE.AAQVKAPLVLKD
RetrocopyEKDGLKFLQAQG<PRTSFEFVLTIVEALSSKEMAAQVKAPLVLKD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_233 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 49 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000037031 retrocopy
Canis familiaris ENSCAFG000000196741 retrocopy
Choloepus hoffmanni ENSCHOG000000043647 retrocopies
Callithrix jacchus ENSCJAG000000003194 retrocopies
Erinaceus europaeus ENSEEUG000000131411 retrocopy
Echinops telfairi ENSETEG000000109151 retrocopy
Homo sapiens ENSG000001162882 retrocopies
Gorilla gorilla ENSGGOG000000121052 retrocopies
Microcebus murinus ENSMICG000000084702 retrocopies
Nomascus leucogenys ENSNLEG00000008790 3 retrocopies
retro_nleu_1025, retro_nleu_2320, retro_nleu_233 ,
Oryctolagus cuniculus ENSOCUG000000165111 retrocopy
Ochotona princeps ENSOPRG000000021512 retrocopies
Pongo abelii ENSPPYG000000019252 retrocopies
Pan troglodytes ENSPTRG000000001023 retrocopies
Rattus norvegicus ENSRNOG000000182892 retrocopies
Tupaia belangeri ENSTBEG0000000947413 retrocopies
Tarsius syrichta ENSTSYG000000014551 retrocopy
Vicugna pacos ENSVPAG000000110761 retrocopy



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