RetrogeneDB ID:

retro_nleu_2330

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397344.1:3940923..3941320(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ISCA1
Ensembl ID:ENSNLEG00000005129
Aliases:None
Description:iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660]


Retrocopy-Parental alignment summary:






>retro_nleu_2330
AAATGTGCCCACCGTGTCCATGGAGAGAGGCTGAGGTGGCGCAGCTCCAGCCCAAGGCATTGGGATGCAGCGACGGCAAA
GATGTCGCTTCCTTAGTCCGGGCAACTGTCCGGGTTTTCAGCAAAAGGAAGCTGCAGCCCACCCGGGCACTCTCACCCTC
ACACCTTCAGCACTAAACAAGATAAAACAATTTCTTAAAGATAAGCCTGAGCTTGTAGGTGTAAAAGTTGGTGTCCGAAC
CAGGGGTTGTAATGGCCTTTCTTATACTCTAGAATATACAAAGACAAAAGGAGATTCTGATGAAGTTATATAAGATGGAG
TCAGAGCATTCACCAAAAAGAAAGCACAGCTAACACTTTTAGGAACAGAAATGGACTATGTTGAAGACAAATTATCC

ORF - retro_nleu_2330 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.82 %
Parental protein coverage: 84.28 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQCARRVHGERLRRPTSGPRHRGAGTAKMS-ASLVRATVRAVSKRKLQPTRA-ALTLTPSAVNKIKQLLKD
.CA.RVHGERLR...S.PRH..A.TAKMS.ASLVRATVR..SKRKLQPTRA..LTLTPSA.NKIKQ.LKD
RetrocopyKCAHRVHGERLRWRSSSPRHWDAATAKMS<ASLVRATVRVFSKRKLQPTRA<TLTLTPSALNKIKQFLKD
ParentalKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLS
KPE.VGVKVGVRTRGCNGLSYTLEYTKTKGDSDE.VI.DGVR.F..KKAQLTLLGTEMDYVEDKLS
RetrocopyKPELVGVKVGVRTRGCNGLSYTLEYTKTKGDSDE-VI*DGVRAFTKKKAQLTLLGTEMDYVEDKLS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2330 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000465262 retrocopies
Dasypus novemcinctus ENSDNOG000000106525 retrocopies
Echinops telfairi ENSETEG000000165371 retrocopy
Gorilla gorilla ENSGGOG000000075182 retrocopies
Monodelphis domestica ENSMODG000000035591 retrocopy
Mus musculus ENSMUSG000000447921 retrocopy
Nomascus leucogenys ENSNLEG00000005129 5 retrocopies
Pongo abelii ENSPPYG000000193395 retrocopies
Rattus norvegicus ENSRNOG000000183434 retrocopies
Tarsius syrichta ENSTSYG000000128262 retrocopies



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