RetrogeneDB ID: | retro_rnor_2254 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:138216805..138217189(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Isca1 | ||
Ensembl ID: | ENSRNOG00000018343 | ||
Aliases: | Isca1, Hbld2, hIscA | ||
Description: | Iron-sulfur cluster assembly 1 homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q80W96] |
Percent Identity: | 89.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSASLVRATVRAVSKRTLQPTRAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTK |
MSA.LV.A..RAVSKR.LQPTRAAL.LTPSAVNKIKQLLK.KPEHVGLKVG.RTRGCNGLSYSLEYTKTK | |
Retrocopy | MSALLVCADARAVSKRKLQPTRAALALTPSAVNKIKQLLKEKPEHVGLKVGIRTRGCNGLSYSLEYTKTK |
Parental | GDADEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNV |
G.AD.EVIQD.V.VFIEKKAQLTLLGTE.DYVEDKLSSEFVFNNPNIKGTCGCGESFNV | |
Retrocopy | GGAD-EVIQDRV*VFIEKKAQLTLLGTEIDYVEDKLSSEFVFNNPNIKGTCGCGESFNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 123 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .62 RPM |
SRP017611_liver | 0 .00 RPM | 40 .61 RPM |