Parental gene:

Isca1, ENSRNOG00000018343

Aliases:Isca1, Hbld2, hIscA
Description:Iron-sulfur cluster assembly 1 homolog, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q80W96]
Organism:Rat (Rattus norvegicus)
Coordinates:17:7507058..7519770(+)


>ENSRNOG00000018343
ATGTCGGCGTCGTTGGTCCGCGCCACCGTGCGGGCCGTGAGCAAGAGAACACTGCAACCCACGCGGGCGGCGCTCACGCT
GACCCCCTCTGCTGTGAACAAGATAAAACAACTTCTTAAAGACAAGCCTGAGCATGTGGGTCTGAAAGTGGGTGTGCGGA
CCAGGGGCTGTAACGGCCTCTCTTACAGCCTGGAGTATACAAAGACAAAAGGAGATGCTGATGAAGAAGTTATTCAAGAC
GGAGTCCGAGTGTTCATCGAGAAGAAAGCCCAGCTAACCCTGTTAGGCACAGAGATGGACTATGTGGAAGACAAACTGTC
CAGTGAGTTTGTGTTCAACAACCCCAACATCAAGGGAACCTGTGGCTGCGGTGAAAGCTTTAACGTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 123 .66 RPM
SRP017611_kidney 85 .62 RPM
SRP017611_liver 40 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046526 ortholog_one2many 2 retrogenes
retro_btau_1787, retro_btau_506,
Canis familiaris ENSCAFG00000001336 ortholog_one2one 1 retrogene
retro_cfam_1087,
Callithrix jacchus ENSCJAG00000001940 ortholog_one2many 6 retrogenes
retro_cjac_1623, retro_cjac_1734, retro_cjac_1870, retro_cjac_2608, retro_cjac_350, retro_cjac_672,
Cavia porcellus ENSCPOG00000011872 ortholog_one2one 2 retrogenes
retro_cpor_1383, retro_cpor_768,
Dasypus novemcinctus ENSDNOG00000010652 ortholog_one2many 5 retrogenes
retro_dnov_1162, retro_dnov_142, retro_dnov_1956, retro_dnov_431, retro_dnov_95,
Equus caballus ENSECAG00000011465 ortholog_one2one 1 retrogene
retro_ecab_936,
Echinops telfairi ENSETEG00000016537 ortholog_one2many 1 retrogene
retro_etel_1857,
Homo sapiens ENSG00000135070 ortholog_one2one 6 retrogenes
retro_hsap_1556, retro_hsap_1768, retro_hsap_1975, retro_hsap_2314, retro_hsap_317, retro_hsap_3329,
Gorilla gorilla ENSGGOG00000007518 ortholog_one2many 2 retrogenes
retro_ggor_1182, retro_ggor_92,
Microcebus murinus ENSMICG00000003889 ortholog_one2one 1 retrogene
retro_mmur_1399,
Myotis lucifugus ENSMLUG00000001288 ortholog_one2one 1 retrogene
retro_mluc_1620,
Macaca mulatta ENSMMUG00000003399 ortholog_one2one 3 retrogenes
retro_mmul_1230, retro_mmul_1365, retro_mmul_2211,
Monodelphis domestica ENSMODG00000003559 ortholog_one2one 1 retrogene
retro_mdom_583,
Mus musculus ENSMUSG00000044792 ortholog_one2many 1 retrogene
retro_mmus_278,
Nomascus leucogenys ENSNLEG00000005129 ortholog_one2one 5 retrogenes
retro_nleu_1674, retro_nleu_1725, retro_nleu_2330, retro_nleu_2618, retro_nleu_2782,
Oryctolagus cuniculus ENSOCUG00000010945 ortholog_one2one 1 retrogene
retro_ocun_1685,
Otolemur garnettii ENSOGAG00000015628 ortholog_one2one 5 retrogenes
retro_ogar_1267, retro_ogar_1545, retro_ogar_2186, retro_ogar_2813, retro_ogar_935,
Pongo abelii ENSPPYG00000019339 ortholog_one2many 5 retrogenes
retro_pabe_1287, retro_pabe_2043, retro_pabe_2744, retro_pabe_2745, retro_pabe_367,
Pan troglodytes ENSPTRG00000021075 ortholog_one2one 7 retrogenes
retro_ptro_1047, retro_ptro_1185, retro_ptro_1316, retro_ptro_1689, retro_ptro_2149, retro_ptro_256, retro_ptro_2842,
Pteropus vampyrus ENSPVAG00000004588 ortholog_one2one 1 retrogene
retro_pvam_956,
Sus scrofa ENSSSCG00000010953 ortholog_one2one 1 retrogene
retro_sscr_558,
Tarsius syrichta ENSTSYG00000012826 ortholog_one2many 2 retrogenes
retro_tsyr_1060, retro_tsyr_1698,
Tursiops truncatus ENSTTRG00000004231 ortholog_one2one 1 retrogene
retro_ttru_1317,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1177 94.64 86.05
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2. retro_rnor_1805 53.54 75.19
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3. retro_rnor_2254 89.92 100.00
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4. retro_rnor_2956 70.08 96.90
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Download FASTA sequences of all ENSRNOG00000018343 retrocopies