RetrogeneDB ID:

retro_nleu_2361

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397348.1:300098..300576(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FTH1
Ensembl ID:ENSNLEG00000003321
Aliases:None
Description:Ferritin [Source:UniProtKB/TrEMBL;Acc:G1QT22]


Retrocopy-Parental alignment summary:






>retro_nleu_2361
CTCAACGGCGGCGTCAACCTGGAGCTCCACGCCTCCTGTGTCTACCTGTCCGTGGCCTTCTACTTAGACCGGGACCATGT
GACCCCGGAGCCTTTCCGCCGCTGCTTCCGGAGCCAGTGGCACGAGAAGAGGAAGCAGGCCCAGAAGCCGATAATGCTGC
AGAACCTGCGCGGTGGCCTCATCTGCCTTCCTGACATCCGGAAACCAGAGCGTGAATACAGGGAGAGTGGGCTCGAGGCC
ACGGAGTGGGCCTGTCACCTGGAGGAAGGTGTCGGCTACAGCCTGCTGGAGCTGCACTACCTGGCCATGGAGAAGGGTGA
CGCCCAGCTGTGCGACTGCCTGCAGAGCCACTTCCTGAACCAGCAGGTCAAGGCCGTCAGAGAGCTGGGTGGCTACCTGA
GCCACCTGCACAAGATGTGGGCCACGGGAAACCGGCCTGGCAGAGTAGCTGAGTGACGAGCTCACCGTGGGCCGCAGT

ORF - retro_nleu_2361 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.88 %
Parental protein coverage: 86.89 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQNQRGGRIFLQDIKKPD
.N...NLEL.AS.VYLS...Y.DRD.V....F...F..Q.HE.R..A.....LQN.RGG.I.L.DI.KP.
RetrocopyLNGGVNLELHASCVYLSVAFYLDRDHVTPEPFRRCFRSQWHEKRKQAQKPIMLQNLRGGLICLPDIRKPE
ParentalCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKM-
....ESGL.A.E.A.HLE..V..SLLELH.LA..K.D..LCD....H.LN.QVKA..ELG.....L.KM.
RetrocopyREYRESGLEATEWACHLEEGVGYSLLELHYLAMEKGDAQLCDCLQSHFLNQQVKAVRELGGYLSHLHKM>
ParentalGAPESGLAEYLFDKHTLGDS
G..E.GLAE.L.D..T.G.S
RetrocopyGPRETGLAE*LSDELTVGRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2361 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 261 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000168311 retrocopy
Canis familiaris ENSCAFG000000159011 retrocopy
Callithrix jacchus ENSCJAG0000001908916 retrocopies
Cavia porcellus ENSCPOG000000265863 retrocopies
Dasypus novemcinctus ENSDNOG0000001712883 retrocopies
Felis catus ENSFCAG000000073821 retrocopy
Homo sapiens ENSG0000016799620 retrocopies
Gorilla gorilla ENSGGOG000000277227 retrocopies
Latimeria chalumnae ENSLACG000000174261 retrocopy
Loxodonta africana ENSLAFG0000000482412 retrocopies
Myotis lucifugus ENSMLUG0000002572616 retrocopies
Monodelphis domestica ENSMODG000000075829 retrocopies
Mus musculus ENSMUSG000000246614 retrocopies
Nomascus leucogenys ENSNLEG00000003321 29 retrocopies
Nomascus leucogenys ENSNLEG0000000471610 retrocopies
Oryctolagus cuniculus ENSOCUG000000141084 retrocopies
Procavia capensis ENSPCAG0000001037713 retrocopies
Pongo abelii ENSPPYG0000000317312 retrocopies
Rattus norvegicus ENSRNOG000000226199 retrocopies
Sus scrofa ENSSSCG000000145409 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000145211 retrocopy



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