RetrogeneDB ID: | retro_nleu_2818 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397439.1:609868..611306(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000008474 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC73 | ||
Ensembl ID: | ENSNLEG00000018050 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.22 % |
Parental protein coverage: | 90.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | REYYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQRS |
R..YTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQRS | |
Retrocopy | RPTYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNGEASTSASIDRSAPLEIGLQRS |
Parental | TQVKRAADEVLAEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVEKIAAIKAKIMA |
TQVKRAADEVL.EAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVEKIAAIKAKIMA | |
Retrocopy | TQVKRAADEVLEEAKKPRIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVEKIAAIKAKIMA |
Parental | KKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNF-SKNIFAILQSVKARE |
KKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRE....T....L....K.F.SKNIFAILQSVKARE | |
Retrocopy | KKRSTIKTDLDDDITALKQRSFVDAEVDVTRDIVSRESMEDT-NNYLTKHRKEF>SKNIFAILQSVKARE |
Parental | EGRAPEQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASAR |
EGRAPEQRPAPNAAPVDPTLRTKQP.PAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASAR | |
Retrocopy | EGRAPEQRPAPNAAPVDPTLRTKQPMPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASAR |
Parental | KTQTPAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRE |
KTQTPAAQPVPRPVSQARPPPNQKKGS.TPIIIIPAATTSLITMLN.KDLLQDLKFVPSDEKKKQGCQRE | |
Retrocopy | KTQTPAAQPVPRPVSQARPPPNQKKGS*TPIIIIPAATTSLITMLNTKDLLQDLKFVPSDEKKKQGCQRE |
Parental | NETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIF |
NETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVA.FVQGPAWQFKGWPWLLPDGSPVD.F | |
Retrocopy | NETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAIFVQGPAWQFKGWPWLLPDGSPVDLF |
Parental | AKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF |
AKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKH.SHLRF | |
Retrocopy | AKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHTSHLRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008675 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012093 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000012222 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018050 | 1 retrocopy |
retro_nleu_2818 ,
|
Oryctolagus cuniculus | ENSOCUG00000016332 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000351 | 1 retrocopy |