RetrogeneDB ID: | retro_ogar_767 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873527.1:30258243..30259419(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC73 | ||
Ensembl ID: | ENSOGAG00000000351 | ||
Aliases: | None | ||
Description: | cell division cycle 73 [Source:HGNC Symbol;Acc:16783] |
Percent Identity: | 81.91 % |
Parental protein coverage: | 74.01 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | RIEDEECVRLDKERLAARLEGHKEGIVQTEQIRSLSEAMSVEKIAAIKAKIMAKKRSTIKTDLDDDITAL |
.IED.ECV.LDKERLAA.LEGHKEGIVQTE.IRSLS.AM.VEKI.AIKAKI.AKKRSTIK.DLDDDIT.L | |
Retrocopy | QIEDKECVSLDKERLAAHLEGHKEGIVQTEKIRSLSKAM*VEKIDAIKAKILAKKRSTIKNDLDDDITVL |
Parental | KQRSFVDAEVDVTRDIVSRERVWRTRTTILQSTGKNFSKNIFAILQSVKAREEGRAPEQRPAPNAA-PVD |
KQRSF.DAEVDVT.D.VSRE..WRT.TTIL..TG.NFSKNIFAILQSVKAREEG.APEQ..APNAA..VD | |
Retrocopy | KQRSFFDAEVDVTQDMVSREGLWRTQTTILYRTGNNFSKNIFAILQSVKAREEGHAPEQQWAPNAA<TVD |
Parental | PTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQA |
P.L.T.QPIPAAYNRYDQE.FKGKEE...FKID.M.TYHGMTLKSV.E.ASA.KTQ..AAQP.PRPVSQA | |
Retrocopy | PMLCTQQPIPAAYNRYDQEKFKGKEEVKSFKIDSMCTYHGMTLKSVMEDASACKTQISAAQPIPRPVSQA |
Parental | RPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQGCQRE-NETLIQRR-KDQMQPG |
RPPPNQKKGS.T..III.AATTSLI.MLNAKD.L.DLKFV.SDEKKKQ.CQ...NE.LI.RR.KDQMQPG | |
Retrocopy | RPPPNQKKGSQTSLIIIAAATTSLIAMLNAKDFL*DLKFVLSDEKKKQCCQQQ>NEILIHRR<KDQMQPG |
Parental | GTAISVTVPYRVV-DQPLKLMPQDWDR-VVAVFVQGPAWQFKGWPWLLPDGSPVDIFAKIKAFHLKYDEV |
GTA.SVTVPYRVV..QPLK.MPQDWD..VVAVFVQGP.WQFK.WPWLLPDGSPV.IFAKIKAFHLKYDEV | |
Retrocopy | GTANSVTVPYRVV<NQPLKPMPQDWDQ<VVAVFVQGPVWQFKDWPWLLPDGSPVHIFAKIKAFHLKYDEV |
Parental | RLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLRF |
.LDPNVQKWDVTVL.LSYHK..L..PVFL.FWETLDRYMVK.KSHLRF | |
Retrocopy | CLDPNVQKWDVTVL*LSYHKHYLGTPVFLCFWETLDRYMVKCKSHLRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008675 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012093 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000012222 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018050 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016332 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000351 | 1 retrocopy |
retro_ogar_767 ,
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