RetrogeneDB ID: | retro_nleu_615 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397268.1:15092735..15093375(-) | ||
Located in intron of: | ENSNLEG00000004655 | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000004684 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS15 | ||
Ensembl ID: | ENSNLEG00000011467 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.93 % |
Parental protein coverage: | 67.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVDPGPAWQRPCNPVRAAKGTA-AAARAPRGLEVTMLRVAWKTLSLIRTQAVTQALVHGLPGGGSARFPF |
LVDPGPAW.RPCNPV.AAKGTA.AAARAPRGLEVTMLRVAWKTL.LIRTQAVTQALV.GLPGGGSARFPF | |
Retrocopy | LVDPGPAWRRPCNPVGAAKGTA>AAARAPRGLEVTMLRVAWKTLNLIRTQAVTQALVPGLPGGGSARFPF |
Parental | NQWGLQPRSLLLQAARGYVIGKPAQPRQDDDPPPSTLLKDYQNVPGIEKVDDVVKRLLSLEMANKKEKLK |
N.WG.QPRSLL.QAARGYVI.KPAQPRQDDDPPPSTLLKDYQ.VPGIEKVDDVVKRLLSLEMANKKEKLK | |
Retrocopy | N*WGAQPRSLLRQAARGYVIRKPAQPRQDDDPPPSTLLKDYQKVPGIEKVDDVVKRLLSLEMANKKEKLK |
Parental | IKQEQLMKKIVANPEDTRSLEARIIALSVKIRSYEEHLEKHRKDKAHKRYLLMSIDQRKKMLKNLRNTNY |
IKQE.L.KKIVANPEDTRSLEARIIALSVKIRSYEEHL.KHRKDKAHKRYLLMSIDQRKKMLKNLRNTNY | |
Retrocopy | IKQEELLKKIVANPEDTRSLEARIIALSVKIRSYEEHLQKHRKDKAHKRYLLMSIDQRKKMLKNLRNTNY |
Parental | DVFE |
DVFE | |
Retrocopy | DVFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001463 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000030390 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001852 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000010877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007581 | 1 retrocopy | |
Felis catus | ENSFCAG00000005265 | 1 retrocopy | |
Homo sapiens | ENSG00000116898 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006475 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028861 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011467 | 1 retrocopy |
retro_nleu_615 ,
|
Otolemur garnettii | ENSOGAG00000002656 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001537 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000541 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026393 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000608 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000958 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008948 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002345 | 1 retrocopy |