RetrogeneDB ID: | retro_tbel_1633 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5319:253836..254221(-) | ||
Located in intron of: | ENSTBEG00000016255 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS15 | ||
Ensembl ID: | ENSTBEG00000000958 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504] |
Percent Identity: | 79.39 % |
Parental protein coverage: | 51.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLRAAWRVLSSIRPQAVTQAPVLGLPGGGSSRLSPNQWGLQPRSLLQATRGYAVQKPVGPSQDNGLP-PS |
MLRA.WRVLSSI.P.AVTQA.VLGLPGGGS.RLSPN...LQP.SLLQAT..YAVQK.V.PSQDN.L..P. | |
Retrocopy | MLRAMWRVLSSIQPEAVTQALVLGLPGGGSMRLSPNH--LQP*SLLQATCRYAVQKLVQPSQDNDLS>PP |
Parental | TLL-KDYQNVPGIEKVDDVVKRLLSLEMANQKEKLKIQQEQLMNKVVANPEDTSSLEARIV |
..L.K..Q.VPGIEKVDDVVKRLLSLEMANQKEKLKIQQ.QL.NKVVANPED.SSLEA.IV | |
Retrocopy | SMLLKNSQKVPGIEKVDDVVKRLLSLEMANQKEKLKIQQKQLKNKVVANPEDISSLEAGIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001463 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000030390 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001852 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000010877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000007581 | 1 retrocopy | |
Felis catus | ENSFCAG00000005265 | 1 retrocopy | |
Homo sapiens | ENSG00000116898 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006475 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028861 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011467 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002656 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001537 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000541 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026393 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000608 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000958 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008948 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002345 | 1 retrocopy |