RetrogeneDB ID: | retro_cpor_430 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_15:1208617..1209369(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS15 | ||
Ensembl ID: | ENSCPOG00000010877 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MLKAAWRAVSLFGFRAATQAPVFGLPGRGRARLLSDQWGLQPQSLLQAACGYATQNPVQPCHDNDPPPST |
M..A.W.A.S.FGF.AA.QAPVFGL.GRG..RLLSDQWGLQPQ...Q.A....TQ.PVQ..H.ND.P... | |
Retrocopy | MSRATWKALSSFGFWAANQAPVFGLLGRGSTRLLSDQWGLQPQN-PQTAQRFSTQKPVQLRHINDLPYFM |
Parental | LLKDYQNVPGIEKVDDVVKRLLSLEMANRKEMLKVKQEQLMNKVMANPEDTRALETRIVALTVKIRNYEE |
L....QN.P.IEK.DD.V.RL.......R....K.KQE..MNK.MANPEDTR.LET.IVA.T.K..NYEE | |
Retrocopy | LFRGHQNIPAIEKGDDIV*RLFGYGQLERN--AKIKQEHFMNKFMANPEDTRSLET*IVAWTIKMCNYEE |
Parental | HMQKHRKDKAHKRYLLMSIDQRKKMLKNLRKTNYNIFERVCREL-GIEYTFPPLYYRKAHRRFLAKKALC |
.MQK..K.K.HK.YLLM.IDQR.KM.KNL.KTNYNIFE...REL..I.YT...LYY.KAH..FLAKK... | |
Retrocopy | YMQKQPKNKVHKCYLLMHIDQR-KMSKNLWKTNYNIFEKIFREL<EIKYTLGGLYYQKAHHHFLAKKFMY |
Parental | IQVFQEVQKLKKQKRAL-KAKAALKQDDHQNEEAHSKAYAEALEEN |
I.VFQEVQKLKKQK..L..AKAA...D..QN.EA..K.Y.EALEEN | |
Retrocopy | I*VFQEVQKLKKQKPTLISAKAAQREDGYQNTEAPFKVYKEALEEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .40 RPM | 35 .66 RPM |
SRP017611_kidney | 0 .42 RPM | 46 .59 RPM |
SRP017611_liver | 0 .57 RPM | 35 .17 RPM |
SRP040447_lung | 0 .08 RPM | 19 .04 RPM |
SRP040447_skeletal_muscle | 0 .03 RPM | 64 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001463 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000030390 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001852 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000010877 | 1 retrocopy |
retro_cpor_430 ,
|
Dipodomys ordii | ENSDORG00000007581 | 1 retrocopy | |
Felis catus | ENSFCAG00000005265 | 1 retrocopy | |
Homo sapiens | ENSG00000116898 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006475 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028861 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011467 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002656 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001537 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000541 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026393 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000608 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000958 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008948 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000002345 | 1 retrocopy |