RetrogeneDB ID: retro_nleu_769

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397272.1:19439895..19440579(-)
• Located in intron of: ENSNLEG00000005924

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA2
• Ensembl ID: ENSNLEG00000011678
• Aliases: None
• Description: Annexin [Source:UniProtKB/TrEMBL;Acc:G1RMA9]

Sequence

>retro_nleu_769
GTGGCTTTGGGCCTATTAAAGACACCTGCTCAGTATGACGCTTCTGAGCTAAAAGCTTCCATGAAGGGGCTGGGAACCGA
TGAGGACTCCCTCATTGAGATCATCTGCTCAACAACCAACCAGGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAATGT
ACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCTGCAAGCTGATGGTTGCCCTGGCAAAGGGT
AGAAGAGCAGAGGATGGCTCTGTCATTGATTACGAACTGATTGAACAAGATGCCCAGGATCTCTATGACGCTGGGGTGAA
GAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACCAAGCGGAGCATGTTTCACTTCCAGAAAGTATTTGATA
GCTACAAGAGCTACAGTCCTCATGACATGTTGGAGAGCATCAAGAAAGAGGTTAAAGGAGACCTGGAAAATGCTTTCCTG
AACCTGGTCCGGTGAATTCAGAACAAGTCCCTGTATTTTGCTGACCAGCTGTACAACTCCATGAAGGGCAAGGGGACTCA
AGATAAGGTCCTGATCAGAATCATGGTCTCCCACAATGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGT
ACAGCAAGTCCCTGTACTATTACATCCAGCAAGACACTAAGGGT

Alignment

ORF - retro_nleu_769 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.79 %
• Parental protein coverage: 66.47 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDF
          V.LGLLKTPAQYDASELKASMKGLGTDEDSLIEIICS.TNQELQEINRVYKEMYKTDLEKDIISDTSGDF
Retrocopy VALGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSTTNQELQEINRVYKEMYKTDLEKDIISDTSGDF

Parental  RKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSP
          .KLMVALAKGRRAEDGSVIDYELI.QDA.DLYDAGVKRKGTDVPKWISIMT.RS..H.QKVFD.YKSYSP
Retrocopy CKLMVALAKGRRAEDGSVIDYELIEQDAQDLYDAGVKRKGTDVPKWISIMTKRSMFHFQKVFDSYKSYSP

Parental  YDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEF
          .DMLESI.KEVKGDLENAFLNLV..IQNK.LYFAD.LY.SMKGKGT.DKVLIRIMVS..EVDMLKIRSEF
Retrocopy HDMLESIKKEVKGDLENAFLNLVR*IQNKSLYFADQLYNSMKGKGTQDKVLIRIMVSHNEVDMLKIRSEF

Parental  KRKYGKSLYYYIQQDTKG
          KRKY.KSLYYYIQQDTKG
Retrocopy KRKYSKSLYYYIQQDTKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_769 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016686	3 retrocopies	retro_cfam_1631, retro_cfam_367, retro_cfam_707,
Homo sapiens	ENSG00000182718	3 retrocopies	retro_hsap_3114, retro_hsap_4150, retro_hsap_580,
Gorilla gorilla	ENSGGOG00000009738	3 retrocopies	retro_ggor_2137, retro_ggor_2788, retro_ggor_515,
Macropus eugenii	ENSMEUG00000008980	3 retrocopies	retro_meug_1000, retro_meug_312, retro_meug_389,
Myotis lucifugus	ENSMLUG00000002464	3 retrocopies	retro_mluc_1569, retro_mluc_2223, retro_mluc_2431,
Monodelphis domestica	ENSMODG00000011604	1 retrocopy	retro_mdom_1471,
Mustela putorius furo	ENSMPUG00000000762	2 retrocopies	retro_mputfur_73, retro_mputfur_79,
Nomascus leucogenys	ENSNLEG00000011678	2 retrocopies	retro_nleu_769 , retro_nleu_802,
Pongo abelii	ENSPPYG00000006526	2 retrocopies	retro_pabe_2572, retro_pabe_607,
Pan troglodytes	ENSPTRG00000007132	2 retrocopies	retro_ptro_2106, retro_ptro_81,