RetrogeneDB ID: | retro_pabe_2572 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:159079575..159080259(-) | ||
Located in intron of: | ENSPPYG00000015128 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA2 | ||
Ensembl ID: | ENSPPYG00000006526 | ||
Aliases: | None | ||
Description: | Annexin A2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R5A0] |
Percent Identity: | 92.11 % |
Parental protein coverage: | 67.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDF |
V.LGLLKTPAQYDASELKASMK.LGTDEDS.IEIICSRTNQELQEINRVYKEMYKTDLEKDIISD.SGDF | |
Retrocopy | VALGLLKTPAQYDASELKASMKELGTDEDSPIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDISGDF |
Parental | RKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSP |
.KLMVALAKGRRAEDGSVIDYELIDQDA.DLYD.GVKRKGTDVP.WISIMTE.S..H.QKVFDRYKSYSP | |
Retrocopy | CKLMVALAKGRRAEDGSVIDYELIDQDAQDLYDVGVKRKGTDVPTWISIMTEQSMFHFQKVFDRYKSYSP |
Parental | YDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEF |
YDMLESI.KEVKGDLENAFLNLVQCIQNKPLYFADRLY.SMKGKGT.DKVLIRIMVS..EVDMLKIRSEF | |
Retrocopy | YDMLESIKKEVKGDLENAFLNLVQCIQNKPLYFADRLYNSMKGKGTQDKVLIRIMVSHNEVDMLKIRSEF |
Parental | KRKYGKSLYYYIQQDTKG |
KRKY.KSLYYYIQQDTKG | |
Retrocopy | KRKYSKSLYYYIQQDTKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .61 RPM |
SRP007412_cerebellum | 0 .12 RPM | 8 .76 RPM |
SRP007412_heart | 0 .12 RPM | 75 .11 RPM |
SRP007412_kidney | 0 .03 RPM | 89 .83 RPM |
SRP007412_liver | 0 .03 RPM | 74 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3114 |
Pan troglodytes | retro_ptro_2106 |
Gorilla gorilla | retro_ggor_2137 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016686 | 3 retrocopies | |
Homo sapiens | ENSG00000182718 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000009738 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000008980 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002464 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011604 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000762 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011678 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006526 | 2 retrocopies |
retro_pabe_2572 , retro_pabe_607,
|
Pan troglodytes | ENSPTRG00000007132 | 2 retrocopies |