>retro_nleu_993
GAAGATGAATACAAAGCTTTTTACAAATCATCTTCAAAGGAAAGTGATGACCCCATGGCTTATATTCACTTTACTGCTGA
AGGGGAAGTTACCTTCAAATCAATTTTATTTGTACCCACATCTGATCCATGTGGTCTATTTGATGCATATGGATCTAAAA
AGAGTGATTACATTAAGCTCTATGTGCTCTGTGTATTCATCACAGACGACTTCCATGATATGATGCCTAAGTACCTTAAT
TTTGTCAAGGGTGTGGTGGACTCAGATGATCTCCCCTTGAATGTTTCCCTTGAGACTCTTCAGCAACATAAACTGCTTAA
GGATATTAGGAAGAAGCTTGTTTGTAAAACTCTGGACATGATCAAGAAGACTGCTGATGAGAAATACAATGATACTTTTT
GGAAAGAATTTGGTACCAACATCAAGCTTGGTATGATTGAAGACCACTCCAATCAAACATGTCTTGCTAAACTTCTTATG
TTCCAGTCTTCTCATCAACCAACTGACATTACTACCCTAGACCAGTATGTGGAAAGAATGAAGGGAAAACAAGACAAAAT
CTACTTCATGGCTGGATCCAGCAGAAAAGAGGCTGAATCTTCTCCATTTGTTGAACGACTTCTGAAAAAAGGCTATGAAG
TTATTTACCTCACAGAACCTGTGGGTGAATACTGCATTCAGGCCCTTCCCAAATTTGATGGGAAGAGGTTCCAGAATGTT
GTCAAGGAAGAAATGAAGTTTGATGAAAGTGAGAAAACTAAGGAGAGTCATGAAGCAGTTGAGAAAGAATTTGAGCCTCT
GCTCAATTGGATGAAAGATAAAGCCCTTAAGGACAAAATTGAGAAGGCTGTGGTGTCTCAGCACCTGACAGAATCTCCGT
GTACTTTGGTGGCCAGCCAGTACAGACGGTCTGGCAACATGGAGAGAATCATGAAAGCACAAGCGTACCAAACAAGCAAG
GGCAGCTCTACAAATTACTATGCAAGTCAGAAGAAAACATTTGAAATCAATCCCAGACACCCGCTGATCAGAGACACGCT
TCGATGAATTAAGGAAGGTGAAGATGATAAAATAGTTTTGGTTCTTGCTGTGGTTTTGTGTGAAACAGCAACACTTCAGT
CAGGATATCTTTTACCAGACACTAAAGCATATGGAGACAGAATAGAAAGAATGCTTCGCTCAGTTTGAACATTGACCCTG
ATGCAAAGGTGGAAGAAGAACCCAAAGAAGAACCTGAAGACACAACAGAAGACACGGAGCAAGATGAAGATGAAGAAATG
GATGTAGGAACAGATGAAGAACAACAAGAAACAGCAAAGGAATCTACAACTGAAAAAGATAAACTG
ORF - retro_nleu_993 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.43 % |
Parental protein coverage: |
56.34 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDD |
| EDEYKAFYKS.SKESDDPMAYIHFTAEGEVTFKSILFVPTS.P.GLFD.YGSKKSDYIKLYV..VFITDD |
Retrocopy | EDEYKAFYKSSSKESDDPMAYIHFTAEGEVTFKSILFVPTSDPCGLFDAYGSKKSDYIKLYVLCVFITDD |
|
Parental | FHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADDKYNDTFWKEFGTN |
| FHDMMPKYLNFVKGVVDSDDLPLNVS.ETLQQHKLLK.IRKKLV.KTLDMIKK.AD.KYNDTFWKEFGTN |
Retrocopy | FHDMMPKYLNFVKGVVDSDDLPLNVSLETLQQHKLLKDIRKKLVCKTLDMIKKTADEKYNDTFWKEFGTN |
|
Parental | IKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKK |
| IKLG.IEDHSN.T.LAKLL.FQSSH.PTDIT.LDQYVERMK.KQDKIYFMAGSSRKEAESSPFVERLLKK |
Retrocopy | IKLGMIEDHSNQTCLAKLLMFQSSHQPTDITTLDQYVERMKGKQDKIYFMAGSSRKEAESSPFVERLLKK |
|
Parental | GYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAVEKEFEPLLNWMKDKALKDKI |
| GYEVIYLTEPV.EYCIQALP.FDGKRFQNV.KE..KFDESEKTKES.EAVEKEFEPLLNWMKDKALKDKI |
Retrocopy | GYEVIYLTEPVGEYCIQALPKFDGKRFQNVVKEEMKFDESEKTKESHEAVEKEFEPLLNWMKDKALKDKI |
|
Parental | EKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRI |
| EKAVVSQ.LTESPC.LVASQY..SGNMERIMKAQAYQT.K..STNYYASQKKTFEINPRHPLIRD.LR.I |
Retrocopy | EKAVVSQHLTESPCTLVASQYRRSGNMERIMKAQAYQTSKGSSTNYYASQKKTFEINPRHPLIRDTLR*I |
|
Parental | KEDEDDKTVLDLAVVLFETATLRSGYLLPDTKAYGDRIERMLR-LSLNIDPDAKVEEEPEEEPEETTEDT |
| KE.EDDK.VL.LAVVL.ETATL.SGYLLPDTKAYGDRIERMLR.LSLNIDPDAKVEEEP.EEPE.TTEDT |
Retrocopy | KEGEDDKIVLVLAVVLCETATLQSGYLLPDTKAYGDRIERMLR<LSLNIDPDAKVEEEPKEEPEDTTEDT |
|
Parental | TEDTEQDEDEEMDVGTDEEEQETAKESTAEKDEL |
| ....EQDEDEEMDVGTDEE.QETAKEST.EKD.L |
Retrocopy | ----EQDEDEEMDVGTDEEQQETAKESTTEKDKL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_993 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
8 retrocopies.