RetrogeneDB ID: | retro_mmul_391 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:94642870..94644080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1931 | ||
Ensembl ID: | ENSMMUG00000023469 | ||
Aliases: | None | ||
Description: | heat shock protein 90kDa beta (Grp94), member 1 precursor [Source:RefSeq peptide;Acc:NP_001182453] |
Percent Identity: | 86.24 % |
Parental protein coverage: | 50.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDD |
EDEYKAFYKSFSK.SDDPMAYI.FTAEGEVTFKS.LFVPTSAPRGLFDEYGSKKSDYIKLYV..VFITD. | |
Retrocopy | EDEYKAFYKSFSKKSDDPMAYIRFTAEGEVTFKSVLFVPTSAPRGLFDEYGSKKSDYIKLYVHCVFITDN |
Parental | FHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADDKYNDTFWKEFGTN |
F.DMM.KYLNFVKGVVDSDDLPLNVS.ETLQQHKLLKVIRKKLV.KTLDMIKKIAD.KYNDTFWKEFGTN | |
Retrocopy | FRDMMSKYLNFVKGVVDSDDLPLNVSLETLQQHKLLKVIRKKLVCKTLDMIKKIADEKYNDTFWKEFGTN |
Parental | IKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSP-FVERLLK |
IKLGV.EDHSN.TRLAKLL.FQSSHHPTDIT.LDQYVERMK.KQDKI......S......S...V.RLLK | |
Retrocopy | IKLGVTEDHSNQTRLAKLLMFQSSHHPTDITTLDQYVERMKRKQDKI-YFMAGSSRKEAESS>YV*RLLK |
Parental | KGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAVEKEFEPLLNWMKDKALKDK |
KGYEVIYLTEPVDEYC.Q.LP.FDGKRFQNV.KEGVKFDESEKTKES.E.VEKEFEPLLNWMKDKALKDK | |
Retrocopy | KGYEVIYLTEPVDEYCSQTLPKFDGKRFQNVVKEGVKFDESEKTKESCETVEKEFEPLLNWMKDKALKDK |
Parental | IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRR |
IEKAVVSQ.LTES.CALVASQYG.SGNM.RIMKA.AYQT.KD.STNYYASQKKTFEINP.HPLIRDMLR. | |
Retrocopy | IEKAVVSQHLTESLCALVASQYGLSGNMDRIMKA*AYQTSKDSSTNYYASQKKTFEINPKHPLIRDMLR* |
Parental | IKE-DEDDKTVLDLAVVLFETATLRSGYLLPDTKAYGDRIERML-RLSLNIDPDAKV |
IKE..EDDK.VL.LAVVL.ETA.LRSGYLLPDTKAYGDRIERML..LSLNIDPDAK. | |
Retrocopy | IKE>GEDDKIVLNLAVVLCETAMLRSGYLLPDTKAYGDRIERML<SLSLNIDPDAKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 292 .56 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 194 .60 RPM |
SRP007412_cerebellum | 0 .13 RPM | 190 .11 RPM |
SRP007412_heart | 0 .00 RPM | 279 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 463 .37 RPM |
SRP007412_liver | 0 .12 RPM | 521 .52 RPM |
SRP007412_testis | 0 .08 RPM | 517 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_184 |
Pan troglodytes | retro_ptro_170 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000166598 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011073 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022686 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000023469 | 1 retrocopy |
retro_mmul_391 ,
|
Nomascus leucogenys | ENSNLEG00000006510 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005372 | 1 retrocopy |