RetrogeneDB ID: | retro_nleu_714 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397270.1:44792876..44794225(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSP90AA1 | ||
Ensembl ID: | ENSNLEG00000015925 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.37 % |
Parental protein coverage: | 62.65 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 3 |
Parental | EEEVETFAFQAEIAQLMSLIINTFYSNKEIF-LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP |
EEEVETFAFQ.EIAQL.SLIIN.FYSNK.IF.L.ELISN.S.ALDKI..ESL.D..KLDS.KEL.I...P | |
Retrocopy | EEEVETFAFQTEIAQLRSLIINIFYSNKQIF>LQELISNASNALDKILCESLADTYKLDSDKELKIDIMP |
Parental | NKQDRTLTIVDTGIGMT-KADLINNLGTIAKSGTKAFMEALQAGADISMI-GQFGVGFYSAYLVAEKVTV |
N.Q..TLT.VDTG.GMT.KAD.INNLGTIAKS.T..FMEALQAGADISM...QFGVGF.SAYLVAEKV.V | |
Retrocopy | NPQECTLTLVDTGTGMT<KADFINNLGTIAKSDTEEFMEALQAGADISMT<CQFGVGFHSAYLVAEKVVV |
Parental | ITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITL |
ITKHNDDEQ.AWE.S.GGSFTV..D.G....RGTK.ILHLKE.QTEY.EER..K..VKKHSQFIG.PITL | |
Retrocopy | ITKHNDDEQ*AWEFSGGGSFTVCADHG----RGTKMILHLKENQTEY*EER*VKDAVKKHSQFIG*PITL |
Parental | FVEKERDKEVSDDEAEEKEDKEEEKEEKESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELN |
...KER.KE.SDDE.EE...K......K..E....IE.VGS.E....K.....KK..KIKEKYIDQEELN | |
Retrocopy | YLRKEREKEISDDETEEEKGKK**E-DKDNEERLKIENVGSNEDDTGK--DN*KKTEKIKEKYIDQEELN |
Parental | KTKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNI |
KTKPIWTRN.D.IT.EEYGEF..S.TNDWEDHLAVKHFS.EGQLEFRALLF.P.RAPFDLFEN.K.K..I | |
Retrocopy | KTKPIWTRNHDYITQEEYGEFCNSHTNDWEDHLAVKHFSIEGQLEFRALLFIP*RAPFDLFENNKNKDTI |
Parental | KLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDK |
KLYV..VFI...C.ELIPE.LNFI.G.VDSEDL.LNI..EMLQ.SKILKVI..N.VK.CLELF.ELAEDK | |
Retrocopy | KLYVLHVFIVHSCDELIPEDLNFICGMVDSEDLSLNI-*EMLQESKILKVIHRNIVKWCLELFSELAEDK |
Parental | ENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGD |
ENYKKFYE..SKN...GI..DS.N...LSELL....S.SGD | |
Retrocopy | ENYKKFYEASSKNLMFGIPKDSPNWRHLSELLHFHSSQSGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006270 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033945 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000002015 | 1 retrocopy | |
Homo sapiens | ENSG00000080824 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013302 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021270 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006510 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015925 | 3 retrocopies |
retro_nleu_714 , retro_nleu_822, retro_nleu_854,
|
Pongo abelii | ENSPPYG00000006153 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006736 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007219 | 1 retrocopy |