RetrogeneDB ID: | retro_obra_17 | ||
Retrocopylocation | Organism: | Oryza brachyantha | |
Coordinates: | 12:3499033..3499945(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OB12G15110 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OB12G14670 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.24 % |
Parental protein coverage: | 75.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MILFGAVQIVFSQIPDFDQIWWLSIVAAVMSFTYSGIGLSLGIAQTVANGGIQGSLTGISIGAGVSSTQK |
M..FGA..IVFSQIP.F..IWWLSIVAAVMSFTYS.IGL..GIA.TVANGG..G...G......V...QK | |
Retrocopy | MLVFGALEIVFSQIPNFHEIWWLSIVAAVMSFTYSSIGLGIGIANTVANGGFRGTIAGAT---NVTAMQK |
Parental | VWRSLQAFGDIAFAYSFSNILIEIQDTIKAPPPSEAKVMTRATRLSVATTTVFYMLCGCMGYAAFGDAAP |
VWRSLQA.G.IAFA..FSN.L.EIQDTIKAPPPSE..VM..ATR.SV..T.VFY.LCG.MGYAAFG.AAP | |
Retrocopy | VWRSLQALGNIAFAFAFSNVLTEIQDTIKAPPPSESAVMKKATRMSVVATSVFYALCGFMGYAAFGNAAP |
Parental | DNLLTGFGFYEPFWLLDVANVAIVVHLVGAYQVFVQPIFAFVERWASRRWPDSGFIARELRVGPFALSLF |
DNLLTGFGFYEPFWL.D.ANVAI.VHLVGAYQVFVQPIFAFVER..S.RWPDSGF...ELR.GPF..S.F | |
Retrocopy | DNLLTGFGFYEPFWLVDAANVAIAVHLVGAYQVFVQPIFAFVERRVSQRWPDSGFVNNELRLGPFCISAF |
Parental | RLTWRSAFVCLTTVVAMLLPFFGNVVGLLGAVSFWPLTVYFPVEMYIAQRGVARGSPRWVSLKTLSACCL |
RL.WRS.FVC.TTVVAM.LPFFG.VVGLLGA.SFWPLTVY.P.EMYIAQR.V.RGS..W..LK...A..L | |
Retrocopy | RLLWRSLFVCFTTVVAMALPFFGVVVGLLGAISFWPLTVYLPSEMYIAQRNVRRGSALWIGLKLFAALGL |
Parental | VVSIAAAAGSIADVIDALKVYRPFSG |
.VS.AA..GS.A.........RPFSG | |
Retrocopy | IVSVAATTGSVAGFVGEFNKFRPFSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA037101 | 1 retrocopy | |
Oryza brachyantha | OB12G14670 | 1 retrocopy |
retro_obra_17 ,
|
Oryza glumaepatula | OGLUM12G05640 | 1 retrocopy | |
Oryza nivara | ONIVA12G04480 | 1 retrocopy | |
Oryza punctata | OPUNC12G04770 | 1 retrocopy | |
Triticum aestivum | Traes_5DL_BB10A3B4B | 2 retrocopies |