>retro_taes_217
ATCCAGCCGCTCGAGGTGTCTCTCGAGGCCGGCAACCTCGCCGACCCCGCCGCGGTCGCGCTCGATGACGACGGCCGCCC
GCGCCGCACCGGCACCGTCCTCACCACAAGCGCGCACATCGTCACCGCCGTCGTCGGCTCCGGCGTCCTCTCGCTCGCCT
GGGCCACCGCGCAGCTCGGCTGGGTCGCGGGTCCCACCACCATGGCGCTCTTCGGCGGCATCGTCTACTACAGCTCCACG
CTTCTCGCCGACTGCTACCGCACCGGCGACCCGGCCGCCGGCACCCGGAACTACTCCTACGTGGAGGCCGTCCGAACCAT
CCTCGGCGGCGCCAAAGTGAAGTTCTGCGGCGTCATACAGTACGCCAACCTCGTCGGCATCGCCATTGGCTACACCATCG
CCGCCTCCATCAGCTTTCATGCCATCACGAGGGCCAACTGCTTCCACAGCAAGGGGCACGACAACGCGTGCCACACCTCC
AGCACGCCCTACATGATCGGCTTCGGCGCCGCGCAGATCGTCTTCTCTCAGATACCCAACTTCGATCAGATACGGTGGCT
CTCCGTCGTCGCCTCCGCCATGTCCTTCGCCTACTCCGGCATCGGGCTCGGGCTCGGAATCGCCCAGACCGTGGCCAACG
GCGGCTTCGGAGGCACCCTCACCGGCGTCGCCATCGGCACGGCGGGCGTCACCGTGATGCAGAAGCTGTGGCGCGTCCTG
CAGGCGCTGGGCAACATCGCCTTCGCCTACTCCTTCTCCAACGTGCTCATCGAGATCCAGGACACCATCAAGGCGCCACC
GCCGTCGGAGGCAGCCGTGATGAAGAAGGCCACGGCGCTGAGCGTGGCCACCACGACGGCGTTCTACGTCATGTGCGGGT
GCATGGGCTACGCGGCCTTCGGCAACGACGCGCCGGACAATCTCCTCACCGGGTTCGGCTTCTACGAGCCCTTCTGGCCG
GTGGACGTCGCCAACGCCGCCATCGTCGTGCACCTCGTCGGCGCCTACCAGGTCTTCTGCCAGCCCATCTTCGCCTTCGT
CCAGCGCTGGGCCGCCGCCAGATGGCCAGAGAGCGACTTCGTCACGAGGGTGGGGCCGTTCGCGCTGAGCGCGCTCCGGC
TTGTGTGGCGCTCGGCGTTCGTGTGCCTGACCACCCTGGTCGCCATGGCGATGCCATCCTTCGGCGCCATCGTGGGGCTC
ATGGGCGCGCTCTCGTTCTGGCCGCTCACCGTCTACTTCCCCGTGGAGATGTACATGAAGCAGCGCGCCGTGGCGCGCGG
GAGCGCGAGGTGGCTCTGCCTCAAGGCGCTCACCGTCGGCTGCCTCGTCGTGTCGGTGGCCGCCACCGTGGGATCAATCG
CCGGCATGGTCGGCGCGTTCAAGGTGTTCCGCCCTTTCAGTGGC
ORF - retro_taes_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.91 % |
Parental protein coverage: |
97.7 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VAPMEVSVEAGNAGD--AAWMDDDGRPRRSGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMLL |
| ..P.EVS.EAGN..D..A...DDDGRPRR.GT..T.SAHI.TAV.GSGVLSLAWA.AQLGWVAGP..M.L |
Retrocopy | IQPLEVSLEAGNLADPAAVALDDDGRPRRTGTVLTTSAHIVTAVVGSGVLSLAWATAQLGWVAGPTTMAL |
|
Parental | FAAVIYYTSTLLAECYRTGDPATGKRNYTYMDAVRSNLGGPKVIFCGVIQYANLVGVAIGYTIASSISMR |
| F....YY.STLLA.CYRTGDPA.G.RNY.Y..AVR..LGG.KV.FCGVIQYANLVG.AIGYTIA.SIS.. |
Retrocopy | FGGIVYYSSTLLADCYRTGDPAAGTRNYSYVEAVRTILGGAKVKFCGVIQYANLVGIAIGYTIAASISFH |
|
Parental | AIRRADCFHANGHADPCKSSSNPYMILFGLVQIVFSQIPDFDQIWWLSIVAAVMSFTYSGIGLSLGITQT |
| AI.RA.CFH..GH...C..SS.PYMI.FG..QIVFSQIP.FDQI.WLS.VA..MSF.YSGIGL.LGI.QT |
Retrocopy | AITRANCFHSKGHDNACHTSSTPYMIGFGAAQIVFSQIPNFDQIRWLSVVASAMSFAYSGIGLGLGIAQT |
|
Parental | ISNGGIKGSLTGISIG-VGITATQKVWRSLQAFGDIAFAYSFSNILIEIQDTIRAPPPSEAKVMKQATRL |
| ..NGG..G.LTG..IG..G.T..QK.WR.LQA.G.IAFAYSFSN.LIEIQDTI.APPPSEA.VMK.AT.L |
Retrocopy | VANGGFGGTLTGVAIGTAGVTVMQKLWRVLQALGNIAFAYSFSNVLIEIQDTIKAPPPSEAAVMKKATAL |
|
Parental | SVATTTVFYMLCGCMGYAAFGDAAPDNLLTGFGFYEPFWLLDIANVAIVVHLVGAYQVFCQPIFAFVERW |
| SVATTT.FY..CGCMGYAAFG..APDNLLTGFGFYEPFW..D.AN.AIVVHLVGAYQVFCQPIFAFV.RW |
Retrocopy | SVATTTAFYVMCGCMGYAAFGNDAPDNLLTGFGFYEPFWPVDVANAAIVVHLVGAYQVFCQPIFAFVQRW |
|
Parental | AASTWPDSVFISREFRVGPFALSVFRLTWRSAFVCLTTVFAMLLPFFGNVVGLLGAVSFWPLTVYFPVEM |
| AA..WP.S.F..R...VGPFALS..RL.WRSAFVCLTT..AM..P.FG..VGL.GA.SFWPLTVYFPVEM |
Retrocopy | AAARWPESDFVTR---VGPFALSALRLVWRSAFVCLTTLVAMAMPSFGAIVGLMGALSFWPLTVYFPVEM |
|
Parental | YIRQRGVPGRSMQGICLRMLSVGCLIVSIAAAAGSIANVIEALKVYKPFSG |
| Y..QR.V...S....CL..L.VGCL.VS.AA..GSIA....A.KV..PFSG |
Retrocopy | YMKQRAVARGSARWLCLKALTVGCLVVSVAATVGSIAGMVGAFKVFRPFSG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_217 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.