RetrogeneDB ID: | retro_obra_5 | ||
Retrocopylocation | Organism: | Oryza brachyantha | |
Coordinates: | 8:121210..121939(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OB08G10170 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OB02G32980 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.71 % |
Parental protein coverage: | 91.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GARAAPFTYVAHALAVAAAAMVLVWCIHFRGGLAFEATNKNLIFNVHPVLMLIGYLILGSEAIMVYKVLP |
G......T.VAH.LAVAA.A.VL.W.IHFRGGLA.....K.LIFN.HPVLML.G...L..EAI..Y...P | |
Retrocopy | GGGVGAWTVVAHVLAVAATALVLLWSIHFRGGLALRSHDKQLIFNTHPVLMLLGLVVLAAEAILSYRSFP |
Parental | --TWKHDSTKLIHLILHAIALVLGVIGIYCAFKFHNESGIANLYSLHSWLGIGTICLYGIQWIFGFVTFF |
......D..K..HL.LHA.AL.LG..GIY..FK.H.E.GI.NLYSLHSW.GI.TI.LY...W...F.TFF | |
Retrocopy | HLLLSRDARKKTHLALHAVALALGALGIYAVFKYHAEAGIPNLYSLHSWIGIATISLYALHWLAAFLTFF |
Parental | FPRASPNVRKGALPWHILFGLFVYILALATAQLGFLEKLTFLQSS--GLDKYGAEAFLVNFTALAVVLFG |
FP.A....R..ALPWH.L.GL.V..LA...AQLGFLEKLTF.Q.....L..YG.EA.LVNFTAL.V...G | |
Retrocopy | FPGAPHPTRRSALPWHALLGLLVFALAVGNAQLGFLEKLTFMQAPPLRLSRYGPEALLVNFTALVVLFLG |
Parental | ASVVVAAVS |
..V..A... | |
Retrocopy | VAVLLATAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA005956 | 1 retrocopy | |
Oryza brachyantha | OB02G32980 | 1 retrocopy |
retro_obra_5 ,
|
Oryza barthii | OBART02G25610 | 1 retrocopy | |
Oryza glumaepatula | OGLUM02G26140 | 1 retrocopy | |
Oryza nivara | ONIVA02G28050 | 1 retrocopy | |
Oryza punctata | OPUNC02G23460 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G27020 | 1 retrocopy | |
Physcomitrella patens | PP1S194_18V6 | 1 retrocopy |