RetrogeneDB ID: | retro_oind_56 | ||
Retrocopylocation | Organism: | Rice subsp. indica (Oryza sativa indica) | |
Coordinates: | 8:110324..111041(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | BGIOSGA027817 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | BGIOSGA005956 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.67 % |
Parental protein coverage: | 88.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VAHALAVAAATMVLVWCIHFRGGLAFEATNKNLIFNVHPVLMLIGYIILGSEAIMVYKVLP--TWKHDTT |
VAH.LAVAA..MVLVWC.HFRGGLA....NK.LIFN.HPVLM..G...L..EAI..Y..L.......D.. | |
Retrocopy | VAHVLAVAATAMVLVWCVHFRGGLALRSHNKQLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDAR |
Parental | KLIHLILHAIALVFGAVGIYCAFKFHNESGIANLYSLHSWLGIGTICLYGIQWIFGFVAFFFPRASPSVR |
K..HL.LHA..L..G.VGIY..FK.H.E..I.NLYSLHSW.GI.TI.LY...W...F..FFFP.AS...R | |
Retrocopy | KKVHLGLHAVGLALGGVGIYAVFKYHAEADIPNLYSLHSWIGIATISLYALHWLLAFLTFFFPGASHDTR |
Parental | KGVLPWHILFGLFVYILALATVELGFLEKLTFLQSS--GLDKYGAEAFLVNFTALIVVLFGASVVVAAVS |
....PWH.L.GL.V..LA.....LGFLEKLTFLQ.....L..YGAEA.LVNFTAL.V.L.G..VV.A... | |
Retrocopy | RSAVPWHALLGLLVFALAVGNAQLGFLEKLTFLQAPPLRLSRYGAEALLVNFTALVVLLLGVAVVLATAN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA005956 | 1 retrocopy |
retro_oind_56 ,
|
Oryza brachyantha | OB02G32980 | 1 retrocopy | |
Oryza barthii | OBART02G25610 | 1 retrocopy | |
Oryza glumaepatula | OGLUM02G26140 | 1 retrocopy | |
Oryza nivara | ONIVA02G28050 | 1 retrocopy | |
Oryza punctata | OPUNC02G23460 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G27020 | 1 retrocopy | |
Physcomitrella patens | PP1S194_18V6 | 1 retrocopy |