>retro_ocun_1279
GTAGCACTGGGGCTGGCGCGCGCGGCGAATCTTAACGCTGCGCCGTCTGCGGACGCTTCCGGGCCACCGGTTTCCCTGCC
TTCCACCCTGGCGCCCCCAGCCCTGGCTCCCCGGCTGCCCTGCCCCAGGCGTCCACGCCCTGCGGGCTCAGCGGATTCAG
CGGGCTCAATCTGCGCAGCACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCTCCCCGCGCCCCCGGTGACCCCCACGC
CGCCACCAGGAGGCAAGGATCGGGAAGCGTTCGAGGCCGAGTACCGACTTGGCCCCCTCCTGGGTAAGGGGGGATTTGGC
ACGGTCTTCGCGGGACATCGCGTCACAGATCGACTCCAGGTGGCCATCAAAGTGATCCCTCGGAATCGTGTGTTGGGCTG
GTCCTCCTTGTCCGACTCAGTCTCATGCCCCCTCGAAGTGGCACTGCTCTGGAAGGTGTGTGCAGGTGGTGGGCACCCTG
GTGTCATCCGCCTGCTCGACTGGTTTGAGACACCTGAGGGCTTCATGCTGGTCCTCGAGCGGCCTCTGCCGGCCCAGGAT
CTCTTTGACTACATCACAGAGAAGGGCCCGCTGGGGGAAGGCCGAAGCCGCAGCTTCTTTGGCCAGGTGGTGGCAGCTGT
CCAACACTGCCACGCCCGTGGAGTCGTCCACCGTGACATCAAGGACGAGAACATCCTGATAGACCTACGCCGGGGCTGCG
CCAAGCTCATCGATTTTGGTTCGGGTGCCCTGCTTCATGATGAACCTTACACTGACTTTGATGGGACAAGGGTGTACAGC
CCGCCGGAGTGGATCTCCCGACACCAGTACCACGCGCTCCCGGCCACTGTCTGGTCCCTGGGCATCCTCCTTTATGACAT
GGTGTGTGGGGACATTCCCTTCAAGAGGGACCAGGAGATTTTGGAGGCTGAACTCCATTTCCCGGGTCATGTCTCCCCAG
ACTGCTGTGCCCTGATCCGCCGGTGCCTGGCCCCTAAACCCTCTTCCCGACCGTCACTGGAGGAGATCCTGCTGGACCCC
TGGATGCAAACACCAGCTGAAGATGCACCCCTCAACCCCCCCAAAGGAGGTCCCTCCCCCTTGGCCTGGTCCCTGCTGCC
C
ORF - retro_ocun_1279 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.67 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VALGLARAANLNAAPSADASGPPVSLPSTLAPP-SPGSPAALPRASTPCGLSGFSGLNLRSTSSMLTKPL |
| VALGLARAANLNAAPSADASGPPVSLPSTLAPP.SPGSPAALP.ASTPCGLSGFSGLNLRSTSSMLTKPL |
Retrocopy | VALGLARAANLNAAPSADASGPPVSLPSTLAPP<SPGSPAALPQASTPCGLSGFSGLNLRSTSSMLTKPL |
|
Parental | QGLPAPPVTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRVTDRLQVAIKVIPRNRVLGWSSLLQ |
| QGLPAPPVTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRVTDRLQVAIKVIPRNRVLGWSSL.. |
Retrocopy | QGLPAPPVTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRVTDRLQVAIKVIPRNRVLGWSSL-- |
|
Parental | SDSVSCPLEVALLWKVCAGGGHPGVIRLLDWFETPEGFMLVLERPLPAQDLFDYITEKGPLGEGRSRSFF |
| SDSVSCPLEVALLWKVCAGGGHPGVIRLLDWFETPEGFMLVLERPLPAQDLFDYITEKGPLGEGRSRSFF |
Retrocopy | SDSVSCPLEVALLWKVCAGGGHPGVIRLLDWFETPEGFMLVLERPLPAQDLFDYITEKGPLGEGRSRSFF |
|
Parental | GQVVAAVQHCHARGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQY |
| GQVVAAVQHCHARGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQY |
Retrocopy | GQVVAAVQHCHARGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQY |
|
Parental | HALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPGHVSPDCCALIRRCLAPKPSSRPSLEEILLDP |
| HALPATVWSLGILLYDMVCGDIPF.RDQEILEAELHFPGHVSPDCCALIRRCLAPKPSSRPSLEEILLDP |
Retrocopy | HALPATVWSLGILLYDMVCGDIPFKRDQEILEAELHFPGHVSPDCCALIRRCLAPKPSSRPSLEEILLDP |
|
Parental | WMQTPAEDAPLNPPKGGPSPLAWSLLP |
| WMQTPAEDAPLNPPKGGPSPLAWSLLP |
Retrocopy | WMQTPAEDAPLNPPKGGPSPLAWSLLP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .55 RPM |
6 .02 RPM |
SRP017611_kidney |
0 .41 RPM |
3 .95 RPM |
SRP017611_liver |
0 .15 RPM |
0 .31 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1279 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1279 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1279 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
8 retrocopies.