RetrogeneDB ID: | retro_sara_222 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_101446:15..485(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIM2 | ||
Ensembl ID: | ENSSARG00000008832 | ||
Aliases: | None | ||
Description: | pim-2 oncogene [Source:HGNC Symbol;Acc:8987] |
Percent Identity: | 96.84 % |
Parental protein coverage: | 61.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RGVVHRDIKDENILMDLRRGCAKLIDFGSGALLHDEPYTDFDGTR-VYSPPEWISRHQYHALPATVWSLG |
RGVVHRDIKDENILMDLRRGCAKLIDFGSGALLHDEPYTDFDGTR.VYSPPEWISRHQYHALPATVWSLG | |
Retrocopy | RGVVHRDIKDENILMDLRRGCAKLIDFGSGALLHDEPYTDFDGTR<VYSPPEWISRHQYHALPATVWSLG |
Parental | ILLYDMVCGDIPFEKDQEILEAELHFPAHVSSDCSALIRRCLASKPSERPSLEEILMDPWMKAAVEDKSL |
ILLYDMVCGDIPFEKDQEILEAELHFPAHVSSDCSALIRRCLASKPSERPSLEEILMDPWMKAAVEDKSL | |
Retrocopy | ILLYDMVCGDIPFEKDQEILEAELHFPAHVSSDCSALIRRCLASKPSERPSLEEILMDPWMKAAVEDKSL |
Parental | DPS--KGGSNPLPWSLLP |
D....KGGSNPLPWSLLP | |
Retrocopy | DDALKKGGSNPLPWSLLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000007968 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031155 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015757 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009613 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008832 | 3 retrocopies |
retro_sara_222 , retro_sara_223, retro_sara_395,
|