RetrogeneDB ID: | retro_ocun_1286 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:5129771..5130113(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNX12 | ||
Ensembl ID: | ENSOCUG00000014919 | ||
Aliases: | None | ||
Description: | sorting nexin 12 [Source:HGNC Symbol;Acc:14976] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 69.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TTYEVRMRTNLP-IFKLKESCVR-RRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESF |
T..EV...T.L...FKL...C...R..SD.EWLKNELE.DS...VPP...K.LK.QL...G.EG.FEE.F | |
Retrocopy | TAHEVHVWTDLR>VFKLRGACAG<RHHSDSEWLKNELEGDSTFAVPPP*EKVLKQQLSLEGEEG-FEEAF |
Parental | IEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKLAA |
I.ERRQGLE.....IAGHP.AQ.ERCL..FL.EEAI.RN......A. | |
Retrocopy | IGERRQGLELLTDRIAGHPQAQTERCLPVFLLEEAIHRNSALARCAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .03 RPM |
SRP017611_liver | 0 .00 RPM | 7 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007871 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018281 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004744 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005858 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014919 | 1 retrocopy |
retro_ocun_1286 ,
|
Otolemur garnettii | ENSOGAG00000008973 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004036 | 2 retrocopies | |
Sorex araneus | ENSSARG00000001830 | 1 retrocopy |