RetrogeneDB ID: | retro_btau_1080 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 25:199095..199495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNX12 | ||
Ensembl ID: | ENSBTAG00000007871 | ||
Aliases: | None | ||
Description: | sorting nexin-12 [Source:RefSeq peptide;Acc:NP_001096727] |
Percent Identity: | 68.66 % |
Parental protein coverage: | 80.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFT-TYEVRMRTNLPIFKLKESCVR |
MSD.AVADT..LN.K.Q.LT.AY..PSNFL.I.IFNPQTVGVG..RFT.TYE..M.T.LP.FKLKESCV. | |
Retrocopy | MSDLAVADTWSLNLKLQELTNAYRLPSNFLDINIFNPQTVGVGCTRFT>TYEICM*TKLPVFKLKESCV* |
Parental | RRYSDFEWLKNELERDSKIV--VPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIA |
R..S.FE.L.NELE....IV..VPPLPGK.LK.QLPFRG.E..FEESFI.E.R.GL.QFI..IA | |
Retrocopy | RCCSNFE*LENELEQERTIVLIVPPLPGKVLKWQLPFRGNERVFEESFIGEKR*GLKQFISRIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 11 .97 RPM |
ERP005899_muscle | 0 .00 RPM | 63 .45 RPM |
SRP017611_brain | 0 .00 RPM | 39 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .40 RPM |
SRP017611_liver | 0 .00 RPM | 17 .06 RPM |
SRP030211_testis | 0 .00 RPM | 8 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007871 | 1 retrocopy |
retro_btau_1080 ,
|
Dasypus novemcinctus | ENSDNOG00000018281 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014919 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008973 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004036 | 2 retrocopies | |
Sorex araneus | ENSSARG00000001830 | 1 retrocopy |