RetrogeneDB ID: | retro_ocun_1308 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:89869757..89870837(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPA8 | ||
Ensembl ID: | ENSOCUG00000015533 | ||
Aliases: | None | ||
Description: | heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241] |
Percent Identity: | 94.44 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSS |
S.L.I....FEVKSTAGDTHLGGEDFDN.MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSS | |
Retrocopy | SQLMISLHLFEVKSTAGDTHLGGEDFDN*MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSS |
Parental | TQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQ |
TQASIEIDSLYEG.DFYTS.TRA.FEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQ | |
Retrocopy | TQASIEIDSLYEGTDFYTSSTRAPFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQ |
Parental | KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRN |
KLLQDFFNGKEL.KSINPDEAVAYGAAVQA.ILS.DKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRN | |
Retrocopy | KLLQDFFNGKELDKSINPDEAVAYGAAVQAPILSADKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRN |
Parental | TTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN |
TTIPTK.TQTFTTYS.NQPGVLIQVYEGERAMTKDNNLL.KFELTGIPPAPRGV.QI.VTFDIDANGILN | |
Retrocopy | TTIPTKHTQTFTTYSNNQPGVLIQVYEGERAMTKDNNLLDKFELTGIPPAPRGVHQIKVTFDIDANGILN |
Parental | VSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEK |
VSAVDKSTGKENKITITNDKG.LSKE.IERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEK | |
Retrocopy | VSAVDKSTGKENKITITNDKGHLSKEYIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEK |
Parental | LQGKINDEDK |
LQGKINDEDK | |
Retrocopy | LQGKINDEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .50 RPM | 730 .91 RPM |
SRP017611_kidney | 0 .20 RPM | 544 .39 RPM |
SRP017611_liver | 0 .00 RPM | 185 .37 RPM |