RetrogeneDB ID:

retro_acar_6

Retrocopy
location
Organism:Anole lizard (Anolis carolinensis)
Coordinates:1:1380945..1382853(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSACAG00000015774
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:HSPA8
Ensembl ID:ENSACAG00000004884
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_acar_6
ATGTCGGGCAAAGCGCCTGCGATTGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGAGTCTTCCAGCATGGGAAGGT
GGAGATCATCGCCAACGACCAAGGCAACCGCACCACGCCAAGCTATGTGGCCTTCACTGACACCGAGCGCCTCATCGGGG
ACGCAGCCAAGAACCAAGTGGCCATGAACCCCAACAACACCATCTTCGATGCCAAGCGCCTCATCGGGCGCAAGTTCGAG
GATGCCACGGTGCAGTCTGACATGAAGCACTGGCCTTTCCGCGTGGTCAGCGAAGCCGGGAAGCCCAAAGTCCAGGTGGA
GTACAAGGGCGAACTCAAGACCTTCTTTCCAGAGGAGATCTCCTCCATGGTGCTGACCAAGATGAAGGAGATCGCAGAGG
CTTACCTCGGCCGCAAAGTCCAGAGCGCCGTCATCACTGTGCCGGCGTATTTCAATGACTCCCAGCGCCAAGCCACTAAG
GATGCCGGCACCATCACTGGCCTCAATGTTCTTCGCATCATTAATGAGCCCACAGCTGCTGCCATCGCCTATGGCCTGGA
CAAGAAAGGCAGTGGGGCCGGCGAGAAGAATGTCCTCATCTTCGACCTGGGCGGTGGCACCTTCGATGTCTCCATCTTGA
CCATCGAAGATGGCATCTTTGAGGTGAAGTCCACGGCTGGTGACACCCACTTGGGAGGCGAGGACTTCGACAACCGCATG
GTGAGCCACTTTGTGGAGGAGTTCAAGCGCAAGCACAAACGCGACATCGCTGGCAACAAGCGGGCCGTCCGGCGGCTGCG
CACAGCCTGCGAGAGGGCCAAGCGCACCCTCAGCTCCTCCACCCAGGCCTCCATCGAGATCGACTCCTTGTTCGATGGCA
TCGACTTCTATACATCCATCACCCGGGCTCGCTTTGAGGAGCTCAACGCCGACCTCTTCCGCGGCACCTTGGAGCCAGTG
GAGAAGGCCCTCCGTGATGCCAAGCTAGACAAAGGCCAGATCAATGAGATTGTGCTTGTTGGCGGCTCCACTCGCATTCC
TAAGATCCAGAAGCTGCTGCAAGACTTCTTTAATGGCAAAGAGCTCAACAAAAGCATCAATCCCGATGAAGCGGTGGCCT
ATGGGGCTGCGGTACAGGCGGCCATCCTGATGGGTGACAAGTCAGAGAATGTACAGGACCTGCTGCTCCTTGACGTGGCA
CCACTGTCTCTTGGCATTGAGACGGCAGGTGGAGTGATGACAGCCTTGATCAAGCGTAACACCACCATTCCTACCAAGCA
AACCCAGACTTTCACCACCTATTCAGACAACCAGAGCAGCGTGTTGGTGCAAGTGTATGAGGGCGAGAGAGCCATGACAA
AGGACAATAATCTGCTGGGCAAGTTTGACCTGACGGGGATCCCTCCAGCCCCCCGTGGTGTGCCCCAAATCGAGGTGACT
TTTGACATTGATGCTAATGGGATCCTCAATGTCACGGCTGTGGACAAGAGCACCGGCAAAGAGAACAAGATCACCATCAC
CAATGACAAGGGTCGCCTCAGCAAGGATGACATCGACCGCATGGTGCAGGAAGCAGAGCGCTACAAGGTGGAAGACGAAT
CCAACCGCGAACGGGTGGTCTCCAAGAATGCCCTGGAGTCCTACGCCTATAACATCAAGCAGACGGTGGAAGACGAGAAG
CTGAAAGGCAAAATTGGGGAGCAGGACAAGCAGAGGATCCTGGAGAAGTGCCAAGAGGTCATCAGCTGGCTCGACCGTAA
CCAGATGGCCGAGAAGGAAGAGTTTGAGCACAAGCAGAAGGAGCTGGAGAAGCTTTGCAACCCCATCATTGCCAAATTGT
ACCAGGGCGCCGGGGCTGCAGGGGCTGGTGCTCCAGGTGGTGGCCCCACCATAGAGGAAGTGGACTAA

ORF - retro_acar_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.74 %
Parental protein coverage: 96.59 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalKGPSVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKR
K.P..GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP.NT.FDAKR
RetrocopyKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKR
ParentalLIGRRFDDAVVQSDMKHWPFTVINDAGRPKVQVEYKGETKSFYPEEISSMVLTKMKEIAEAYLGKTVTNA
LIGR.F.DA.VQSDMKHWPF.V...AG.PKVQVEYKGE.K.F.PEEISSMVLTKMKEIAEAYLG..V..A
RetrocopyLIGRKFEDATVQSDMKHWPFRVVSEAGKPKVQVEYKGELKTFFPEEISSMVLTKMKEIAEAYLGRKVQSA
ParentalVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA--ERNVLIFDLGGGTFDVSIL
V.TVPAYFNDSQRQATKDAGTI.GLNVLRIINEPTAAAIAYGLDKK.....E.NVLIFDLGGGTFDVSIL
RetrocopyVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGSGAGEKNVLIFDLGGGTFDVSIL
ParentalTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISDNKRAVRRLRTACERAKRTLSSSTQA
TIEDGIFEVKSTAGDTHLGGEDFDNRMV.HF..EFKRKHK.DI..NKRAVRRLRTACERAKRTLSSSTQA
RetrocopyTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHFVEEFKRKHKRDIAGNKRAVRRLRTACERAKRTLSSSTQA
ParentalSIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQVHDIVLVGGSTRIPKIQKLL
SIEIDSL..GIDFYTSITRARFEELNADLFRGTL.PVEKALRDAKLDK.Q...IVLVGGSTRIPKIQKLL
RetrocopySIEIDSLFDGIDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQINEIVLVGGSTRIPKIQKLL
ParentalQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTI
QDFFNGKELNKSINPDEAVAYGAAVQAAIL.GDKSENVQDLLLLDV.PLSLGIETAGGVMT.LIKRNTTI
RetrocopyQDFFNGKELNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTI
ParentalPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA
PTKQTQTFTTYSDNQ..VL.QVYEGERAMTKDNNLLGKF.LTGIPPAPRGVPQIEVTFDIDANGILNV.A
RetrocopyPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNVTA
ParentalVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQG
VDKSTGKENKITITNDKGRLSK.DI.RMVQEAE.YK.EDE..R..V.SKN.LESYA.N.K.TVEDEKL.G
RetrocopyVDKSTGKENKITITNDKGRLSKDDIDRMVQEAERYKVEDESNRERVVSKNALESYAYNIKQTVEDEKLKG
ParentalKISDDDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFP
KI...DKQ.IL.KC.E.I.WLD.NQ.AEKEEFEH.QKELEK.CNPII.KLYQ.AG....G.PGG.P
RetrocopyKIGEQDKQRILEKCQEVISWLDRNQMAEKEEFEHKQKELEKLCNPIIAKLYQGAGAAGAGAPGGGP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP009831_adrenal 5 .65 RPM 419 .04 RPM
SRP009831_brain 14 .77 RPM 339 .85 RPM
SRP009831_dewlap 40 .37 RPM 836 .48 RPM
SRP009831_embryo 16 .83 RPM 1106 .78 RPM
SRP009831_heart 19 .56 RPM 145 .69 RPM
SRP009831_liver 2 .33 RPM 250 .61 RPM
SRP009831_lung 19 .09 RPM 157 .06 RPM
SRP009831_ovary 42 .89 RPM 1351 .18 RPM
SRP009831_skeletal_muscle 16 .39 RPM 21 .31 RPM
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_6 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_6 was not experimentally validated.

Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 35 parental genes, and 119 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG00000004884 2 retrocopies
retro_acar_21, retro_acar_6 ,
Ailuropoda melanoleuca ENSAMEG000000084251 retrocopy
Anas platyrhynchos ENSAPLG000000106671 retrocopy
Bos taurus ENSBTAG000000131621 retrocopy
Canis familiaris ENSCAFG000000116663 retrocopies
Ciona intestinalis ENSCING000000096651 retrocopy
Callithrix jacchus ENSCJAG000000076485 retrocopies
Cavia porcellus ENSCPOG000000041693 retrocopies
Ciona savignyi ENSCSAVG000000085881 retrocopy
Dipodomys ordii ENSDORG000000154671 retrocopy
Equus caballus ENSECAG000000135102 retrocopies
Echinops telfairi ENSETEG000000109961 retrocopy
Ficedula albicollis ENSFALG000000058121 retrocopy
Felis catus ENSFCAG000000011326 retrocopies
Homo sapiens ENSG000001099718 retrocopies
Gallus gallus ENSGALG000000065121 retrocopy
Gorilla gorilla ENSGGOG000000083818 retrocopies
Loxodonta africana ENSLAFG000000303124 retrocopies
Meleagris gallopavo ENSMGAG000000019291 retrocopy
Myotis lucifugus ENSMLUG000000048343 retrocopies
Macaca mulatta ENSMMUG000000046967 retrocopies
Monodelphis domestica ENSMODG000000129582 retrocopies
Mustela putorius furoENSMPUG000000058109 retrocopies
Mus musculus ENSMUSG000000156568 retrocopies
Nomascus leucogenys ENSNLEG000000074198 retrocopies
Oryctolagus cuniculus ENSOCUG000000155334 retrocopies
Oreochromis niloticus ENSONIG000000047591 retrocopy
Pongo abelii ENSPPYG000000039879 retrocopies
Pelodiscus sinensis ENSPSIG000000124502 retrocopies
Pan troglodytes ENSPTRG000000044045 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000037561 retrocopy
Taeniopygia guttata ENSTGUG000000004911 retrocopy
Takifugu rubripes ENSTRUG000000052651 retrocopy
Tursiops truncatus ENSTTRG000000111396 retrocopies
Xiphophorus maculatus ENSXMAG000000016021 retrocopy



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