Parental gene:

ENSCAFG00000011666

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:5:11293059..11296611(+)


>ENSCAFG00000011666
ATGTCTAAGGGACCTGCAGTCGGGATCGATCTTGGCACCACCTACTCCTGCGTGGGTGTCTTCCAGCACGGGAAAGTGGA
AATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCCTTCACGGACACCGAACGATTGATCGGTGATG
CTGCGAAGAATCAAGTTGCGATGAACCCCACCAACACGGTTTTCGATGCCAAGCGGCTGATTGGACGTAGATTTGATGAT
GCTGTCGTCCAATCTGATATGAAGCATTGGCCTTTCATGGTGGTGAATGATGCTGGCAGGCCTAAAGTCCAAGTAGAGTA
CAAGGGGGAGACCAAAAGTTTCTATCCAGAGGAGGTGTCCTCTATGGTCCTGACGAAGATGAAGGAAATTGCAGAGGCCT
ACCTTGGGAAGACTGTTACCAATGCAGTTGTCACGGTACCTGCATACTTCAATGACTCTCAGCGTCAGGCTACCAAAGAT
GCTGGAACTATTGCCGGTCTTAATGTACTTCGAATTATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCTTAGACAA
GAAGGTTGGAGCTGAAAGGAACGTGTTGATCTTTGATTTAGGAGGTGGCACTTTTGATGTGTCCATCCTTACTATTGAAG
ATGGGATCTTTGAGGTCAAGTCCACAGCTGGAGACACTCACTTAGGTGGAGAAGACTTTGACAACAGAATGGTCAACCAT
TTTATTGCAGAATTCAAGCGCAAACACAAGAAGGACATCAGCGAAAACAAGAGGGCTGTCCGCCGTCTCCGTACTGCATG
TGAACGGGCTAAGCGTACACTTTCTTCCAGCACCCAGGCCAGTATTGAGATTGATTCTCTGTATGAAGGAATCGACTTCT
ATACCTCTATTACTCGTGCCCGGTTTGAAGAATTAAATGCTGACCTCTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCT
CTTCGAGATGCCAAGCTGGACAAGTCTCAGATCCATGACATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGATTCA
GAAACTTCTGCAAGATTTCTTCAATGGAAAGGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAG
CTGTCCAGGCAGCCATTCTTTCTGGTGACAAATCTGAAAATGTTCAAGATTTGCTGCTATTGGATGTCACCCCACTTTCT
CTTGGTATTGAAACTGCTGGAGGAGTCATGACTGTGCTCATCAAGCGCAATACTACCATTCCTACAAAACAGACACAAAC
CTTTACTACCTACTCTGACAACCAGCCTGGTGTGCTTATTCAGGTCTATGAAGGTGAGCGTGCTATGACCAAGGATAACA
ACCTACTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCTCCTCGTGGCGTTCCTCAGATTGAAGTCACTTTTGATATT
GATGCAAATGGTATCCTCAATGTGTCTGCTGTGGATAAGAGCACAGGAAAAGAGAATAAGATTACCATCACTAATGACAA
GGGCCGCTTGAGCAAGGAGGACATTGAGCGCATGGTCCAGGAAGCTGAGAAGTACAAAGCCGAAGATGAGAAGCAGAGAG
ACAAGGTGTCTTCCAAGAATTCACTTGAGTCTTATGCTTTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAGGGC
AAAATCAATGATGAAGACAAACAGAAGATTCTTGACAAGTGCAATGAAATCATCAACTGGCTCGATAAGAACCAGACTGC
AGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTGGAGAAAGTCTGCAATCCCATCATTACGAAGCTATACCAGAGTG
CAGGAGGCATGCCAGGAGGAATGCCTGGAGGCTTTCCTGGTGGTGGAGCTCCTCCCTCTGGTGGTGCCTCCTCTGGGCCT
ACCATTGAAGAGGTTGATTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 374 .92 RPM
SRP017611_brain 810 .44 RPM
SRP017611_kidney 1005 .22 RPM
SRP017611_liver 518 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004884 ortholog_one2many 2 retrogenes
retro_acar_21, retro_acar_6,
Ailuropoda melanoleuca ENSAMEG00000008425 possible_ortholog 1 retrogene
retro_amel_126,
Anas platyrhynchos ENSAPLG00000010667 ortholog_one2many 1 retrogene
retro_apla_6,
Bos taurus ENSBTAG00000013162 possible_ortholog 1 retrogene
retro_btau_354,
Ciona intestinalis ENSCING00000009665 ortholog_one2many 1 retrogene
retro_cint_12,
Callithrix jacchus ENSCJAG00000007648 possible_ortholog 5 retrogenes
retro_cjac_2388, retro_cjac_3306, retro_cjac_3898, retro_cjac_4057, retro_cjac_721,
Cavia porcellus ENSCPOG00000004169 possible_ortholog 3 retrogenes
retro_cpor_1072, retro_cpor_619, retro_cpor_938,
Ciona savignyi ENSCSAVG00000008588 ortholog_many2many 1 retrogene
retro_csav_3,
Dipodomys ordii ENSDORG00000015467 possible_ortholog 1 retrogene
retro_dord_16,
Equus caballus ENSECAG00000013510 ortholog_one2one 2 retrogenes
retro_ecab_291, retro_ecab_628,
Echinops telfairi ENSETEG00000010996 ortholog_one2many 1 retrogene
retro_etel_43,
Ficedula albicollis ENSFALG00000005812 ortholog_one2many 1 retrogene
retro_falb_18,
Felis catus ENSFCAG00000001132 possible_ortholog 6 retrogenes
retro_fcat_132, retro_fcat_1331, retro_fcat_1571, retro_fcat_1775, retro_fcat_556, retro_fcat_79,
Homo sapiens ENSG00000109971 possible_ortholog 8 retrogenes
retro_hsap_2384, retro_hsap_2710, retro_hsap_2758, retro_hsap_340, retro_hsap_3698, retro_hsap_4892, retro_hsap_4896, retro_hsap_68,
Gallus gallus ENSGALG00000006512 ortholog_one2many 1 retrogene
retro_ggal_8,
Gorilla gorilla ENSGGOG00000008381 possible_ortholog 8 retrogenes
retro_ggor_1053, retro_ggor_1810, retro_ggor_1888, retro_ggor_1918, retro_ggor_2501, retro_ggor_3054, retro_ggor_3057, retro_ggor_360,
Loxodonta africana ENSLAFG00000030312 ortholog_one2many 4 retrogenes
retro_lafr_1218, retro_lafr_391, retro_lafr_790, retro_lafr_797,
Meleagris gallopavo ENSMGAG00000001929 ortholog_one2many 1 retrogene
retro_mgal_9,
Myotis lucifugus ENSMLUG00000004834 possible_ortholog 3 retrogenes
retro_mluc_1800, retro_mluc_2300, retro_mluc_777,
Macaca mulatta ENSMMUG00000004696 possible_ortholog 7 retrogenes
retro_mmul_1536, retro_mmul_2188, retro_mmul_2628, retro_mmul_2632, retro_mmul_580, retro_mmul_778, retro_mmul_963,
Monodelphis domestica ENSMODG00000012958 ortholog_many2many 2 retrogenes
retro_mdom_127, retro_mdom_99,
Mustela putorius furo ENSMPUG00000005810 ortholog_one2many 9 retrogenes
retro_mputfur_1048, retro_mputfur_1056, retro_mputfur_1144, retro_mputfur_131, retro_mputfur_188, retro_mputfur_309, retro_mputfur_627, retro_mputfur_694, retro_mputfur_958,
Mus musculus ENSMUSG00000015656 possible_ortholog 8 retrogenes
retro_mmus_2244, retro_mmus_2584, retro_mmus_26, retro_mmus_2621, retro_mmus_2840, retro_mmus_316, retro_mmus_351, retro_mmus_620,
Nomascus leucogenys ENSNLEG00000007419 ortholog_one2one 8 retrogenes
retro_nleu_119, retro_nleu_1258, retro_nleu_1261, retro_nleu_1582, retro_nleu_175, retro_nleu_1781, retro_nleu_370, retro_nleu_64,
Oryctolagus cuniculus ENSOCUG00000015533 possible_ortholog 4 retrogenes
retro_ocun_1308, retro_ocun_53, retro_ocun_584, retro_ocun_753,
Oreochromis niloticus ENSONIG00000004759 ortholog_many2many 1 retrogene
retro_onil_2,
Pongo abelii ENSPPYG00000003987 possible_ortholog 9 retrogenes
retro_pabe_183, retro_pabe_2193, retro_pabe_2254, retro_pabe_2260, retro_pabe_2261, retro_pabe_3153, retro_pabe_355, retro_pabe_3804, retro_pabe_3808,
Pelodiscus sinensis ENSPSIG00000012450 ortholog_one2many 2 retrogenes
retro_psin_17, retro_psin_5,
Pan troglodytes ENSPTRG00000004404 possible_ortholog 5 retrogenes
retro_ptro_1743, retro_ptro_2507, retro_ptro_272, retro_ptro_3259, retro_ptro_3264,
Ictidomys tridecemlineatus ENSSTOG00000003756 ortholog_one2one 1 retrogene
retro_itri_51,
Taeniopygia guttata ENSTGUG00000000491 ortholog_one2many 1 retrogene
retro_tgut_7,
Takifugu rubripes ENSTRUG00000005265 ortholog_one2many 1 retrogene
retro_trub_30,
Tursiops truncatus ENSTTRG00000011139 possible_ortholog 6 retrogenes
retro_ttru_1507, retro_ttru_1650, retro_ttru_1696, retro_ttru_35, retro_ttru_741, retro_ttru_808,
Xiphophorus maculatus ENSXMAG00000001602 ortholog_many2many 1 retrogene
retro_xmac_20,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_140 86.39 97.52
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2. retro_cfam_191 99.07 100.00
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3. retro_cfam_509 68.17 53.25
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Download FASTA sequences of all ENSCAFG00000011666 retrocopies