RetrogeneDB ID: | retro_ocun_1777 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018887:638874..639387(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RIMKLB | ||
Ensembl ID: | ENSOCUG00000013997 | ||
Aliases: | None | ||
Description: | ribosomal modification protein rimK-like family member B [Source:HGNC Symbol;Acc:29228] |
Percent Identity: | 80.7 % |
Parental protein coverage: | 59.38 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MCSSVAAKLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEIVLTIEQGNLGLRINGELISAY |
.C..V.AK.WFLTD..IREDY..KEIL..LKAKCCEEELDFRAVVMDEIVLTIEQ.NLGL.INGELISAY | |
Retrocopy | ICCFVSAKFWFLTDHCIREDYLKKEIL*TLKAKCCEEELDFRAVVMDEIVLTIEQRNLGLQINGELISAY |
Parental | PQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYGGHEN |
PQVVV.RVPTPWV.S.SDITV..HLEKMGC.LMN..Q.ILNCVN.FWT..ELA.H.VPLPD.FS.GGHEN | |
Retrocopy | PQVVVMRVPTPWVHSASDITVFHHLEKMGC*LMN*TQVILNCVNTFWTLPELASHDVPLPDAFS*GGHEN |
Parental | FAKMIDEAEVLEFPMVVKNTRGHRGKAVFLA |
FAKMIDEAEVLE.P..VKNT.GHRGKAVFLA | |
Retrocopy | FAKMIDEAEVLEYPVIVKNTQGHRGKAVFLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000166532 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000332 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013997 | 1 retrocopy |
retro_ocun_1777 ,
|
Otolemur garnettii | ENSOGAG00000011440 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004244 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004643 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023814 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003996 | 1 retrocopy |