RetrogeneDB ID: | retro_ocun_1885 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:43352351..43352597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000028214 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFDN1 | ||
Ensembl ID: | ENSOCUG00000009432 | ||
Aliases: | None | ||
Description: | prefoldin subunit 1 [Source:HGNC Symbol;Acc:8866] |
Percent Identity: | 91.46 % |
Parental protein coverage: | 67.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAED |
K..AHLTDTEIMTLVDETNMYEGVGRM.ILQ.KEVIHNQLLEKQKIAEEKIK.LEQKKSYLERS.KEAED | |
Retrocopy | KTCAHLTDTEIMTLVDETNMYEGVGRMLILQFKEVIHNQLLEKQKIAEEKIKDLEQKKSYLERSIKEAED |
Parental | NIREMLMARRAQ |
NI.EMLMARRAQ | |
Retrocopy | NIWEMLMARRAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .28 RPM | 32 .95 RPM |
SRP017611_kidney | 1 .01 RPM | 32 .03 RPM |
SRP017611_liver | 0 .00 RPM | 7 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005742 | 8 retrocopies | |
Equus caballus | ENSECAG00000011843 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019281 | 1 retrocopy | |
Felis catus | ENSFCAG00000001272 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002726 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000000349 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009432 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000003376 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018653 | 1 retrocopy |