Parental gene: | PFDN1, ENSCAFG00000005742 |
| Aliases: | None |
| Description: | Canis lupus familiaris prefoldin subunit 1 (PFDN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252417] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 2:35454408..35519700(-) |
>ENSCAFG00000005742
ATGGCGGCTCCCGTGGATCTGGAGTTGAAGAAGGCCTTCACAGAACTTCAAGCCAAAGTTATTGACACTCAACAGAAGGT
GAAGCTTGCAGACATACAGATTGAACAGCTAAACAGAACGAAAAAGCACGCACATCTTACAGATACAGAGATTATGACTT
TGGTAGATGAGACTAACATGTATGAAGGTGTAGGAAGAATGTTTATTCTTCAGTCCAAGGAGGTAATTCACAGTCAGCTG
TTAGAGAAACAGAAAATAGCAGAAGAAAAAATTAAAGAACTAGAACAGAAAAAATCCTACCTGGAGCGGAGTGTAAAGGA
AGCTGAGGACAACATCCGGGAGATGCTGATGGCACGAAGGGCACAGTAG
ATGGCGGCTCCCGTGGATCTGGAGTTGAAGAAGGCCTTCACAGAACTTCAAGCCAAAGTTATTGACACTCAACAGAAGGT
GAAGCTTGCAGACATACAGATTGAACAGCTAAACAGAACGAAAAAGCACGCACATCTTACAGATACAGAGATTATGACTT
TGGTAGATGAGACTAACATGTATGAAGGTGTAGGAAGAATGTTTATTCTTCAGTCCAAGGAGGTAATTCACAGTCAGCTG
TTAGAGAAACAGAAAATAGCAGAAGAAAAAATTAAAGAACTAGAACAGAAAAAATCCTACCTGGAGCGGAGTGTAAAGGA
AGCTGAGGACAACATCCGGGAGATGCTGATGGCACGAAGGGCACAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 4 .45 RPM |
| SRP017611_kidney | 17 .63 RPM |
| SRP017611_liver | 4 .06 RPM |
| SRP012049_cerebellum | 7 .31 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000011843 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000005357 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019281 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000001272 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000113068 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000002726 | ortholog_one2many | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000000349 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009432 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003376 | possible_ortholog | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000017310 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018653 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_251 | 68.85 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_276 | 78.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_417 | 89.92 | 97.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_788 | 95.08 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_997 | 83.61 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1742 | 85.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1893 | 79.17 | 98.36 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_1943 | 97.54 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000005742 retrocopies