>retro_ocun_191
ATGAGTAAGAGCAAAGATGATGCCCCTCATGAGCTGGAGAGCCAGTTTATCTTGCGCCTGCCTCCAGAATATGCTGCTAC
TGTGAGGAGGGCAGTGCAGTCGGGGCATGTCAACCTGAAAGACAGACTGACCATCGAGTTACACCCCGATGGGCGTCATG
GAATTGTCAGAGTGGACCGGGTCCCTCTGGCCTCAAAACTGGTGGATCTGCCGTGTGTTATGGAAAGCTTGAAAACCATC
GATAAAAAAACCTTTTACAAGACTGCTGATATCTGTCAGATGCTCGTGTCCACAGTTGATGGTGATCTTTATCCCCCTGT
GGAGGAGCCAGTTGCTGCTGCTGACCCCAAAGCAAGCAAGAAAAAGGATAAGGACAAAGAGAAAAAGTTCGTCTGGAACC
ATGGAATTACTCTGCCTCTAAAGAATGTCAGAAAGAGAAGATTCCGGAAGACAGCAAAGAAAAAGTATATTGAGTCTCCA
GACGTGGAGAAAGAAGTGAAGCGGTTGCTGAGTACAGATGCGGAAGCTGTCAGTACTCGCTGGGAGATAATTGCTGAAGA
TGAAACAAAAGAGACGGAGAATCAAGGCCTTGACATCTCTTCCCCAGGAATGTCTGGCCACAGGCAGGGCCAGGACTCCC
TGGAGCACGATGAGCTTCGGGAGATATTCAATGACCTCAGCAGCAGCAGCGAGGATGAAGATGACACCCAGCACCAGGAC
GAAGAAGATATAAACATCATCGACACTGAGGAAGACCTGGAGAGACAGCTGCAGGACAAGCTGAATGAGTCAGATGAACA
GCACCAAGAAAACGAAGGGACCAACCAGCTGGTTATGGGCATTCAGAAGCAGATTGACAACATGAAAGGCAAGCTCCAGG
AGACCCAGGACAGGGCCAAGCGACAGGAGGATCTCATCATGAAGGTGGAAAACCTGGCTCTCAAGAACAGATTTCAGGCT
GTGCTGGATGAGTTAAAACAAAAGGAAGACCGAGAAAAGGAGCAGCTCAGCTCTTTGCAGGAAGAGCTGGAGTCACTCCT
AGAGAAGTAA
ORF - retro_ocun_191 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
52.26 % |
Parental protein coverage: |
64.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MTKSQDEVPHELENQFILRVPPEYASTIRKMVRSRDVAMKDKLKIDLSPDGRRATVEVDKVSLAAKLVDL |
| M.KS.D..PHELE.QFILR.PPEYA.T.R..V.S..V..KD.L.I.L.PDGR...V.VD.V.LA.KLVDL |
Retrocopy | MSKSKDDAPHELESQFILRLPPEYAATVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDL |
|
Parental | PCVVGSMKTFDKKTFFTTADISQMLVCTTADDQPQSSPEEPVASADLDLMDISEREKKKSYTWKHGITPP |
| PCV..S.KT.DKKTF..TADI.QMLV..T.D.......EEPVA.AD..........K.K...W.HGIT.P |
Retrocopy | PCVMESLKTIDKKTFYKTADICQMLV-STVDGDLYPPVEEPVAAADPKASKKKDKDKEKKFVWNHGITLP |
|
Parental | LKNVRKKRFRKTTKKRYVDSPAVEKEVKRLLYSDAEAISARWEVIAEGEDKEIESQGCISGFKIS-PGSS |
| LKNVRK.RFRKT.KK.Y..SP.VEKEVKRLL..DAEA.S.RWE.IA..ED...E......G..IS.PG.S |
Retrocopy | LKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEIIA--EDETKETEN--QGLDISSPGMS |
|
Parental | GEKRGRISSESIEYN-ILREMFSFSIDNE----EEEETSSTTDCEEDLERELQAKLLESN-LYKSKEASN |
| G...G..S.E..E...I.....S.S.D........EE.....D.EEDLER.LQ.KL.ES.......E..N |
Retrocopy | GHRQGQDSLEHDELREIFNDLSSSSEDEDDTQHQDEEDINIIDTEEDLERQLQDKLNESDEQHQENEGTN |
|
Parental | ALVLTIQKQIHFLERKLRNIQCQTQRQNHLFMKVESLPLKNHLKSVLEKLNLEEKQRNEQLISLQEKLKC |
| .LV..IQKQI.....KL...Q....RQ..L.MKVE.L.LKN....VL..L...E....EQL.SLQE.L.. |
Retrocopy | QLVMGIQKQIDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELES |
|
Parental | ILKK |
| .L.K |
Retrocopy | LLEK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
65 .95 RPM |
0 .11 RPM |
SRP017611_kidney |
81 .59 RPM |
0 .20 RPM |
SRP017611_liver |
26 .90 RPM |
0 .08 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_191 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_191 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_191 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.